Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs151387	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs151477	0.86[ASN][1000 genomes]
rs151478	0.83[ASN][1000 genomes]
rs151483	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs236743	0.91[ASN][1000 genomes]
rs236744	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs236747	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs236748	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs236749	0.86[ASN][1000 genomes]
rs236750	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs236751	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs236753	0.94[ASN][1000 genomes]
rs236771	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs236772	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs236773	0.93[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs238450	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs238455	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs238457	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs238458	0.90[ASN][1000 genomes]
rs238459	0.90[ASN][1000 genomes]
rs238460	0.92[ASN][1000 genomes]
rs424277	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs439538	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv428447	chr4:103103730-103262107	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103110800-103112200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr4:103110800-103112200	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr4:103110800-103112200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr4:103111000-103112000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr4:103111000-103112200	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr4:103111200-103111800	Enhancers	H9 Cell Line	embryonic stem cell
7	chr4:103111200-103112200	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr4:103111400-103111800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr4:103111400-103112000	Enhancers	HUES6 Cell Line	embryonic stem cell

Quick Search: