Variant report
| Variant | rs238458 |
|---|---|
| Chromosome Location | chr4:103104722-103104723 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs151387 | 0.94[ASN][1000 genomes] |
| rs151477 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs151478 | 0.84[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs151483 | 0.98[ASN][1000 genomes] |
| rs236743 | 0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs236744 | 0.94[ASN][1000 genomes] |
| rs236746 | 0.90[ASN][1000 genomes] |
| rs236747 | 0.84[ASN][1000 genomes] |
| rs236748 | 0.84[ASN][1000 genomes] |
| rs236749 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs236750 | 0.94[ASN][1000 genomes] |
| rs236751 | 0.95[ASN][1000 genomes] |
| rs236753 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs236771 | 0.94[ASN][1000 genomes] |
| rs236772 | 0.94[ASN][1000 genomes] |
| rs236773 | 0.92[ASN][1000 genomes] |
| rs238450 | 0.89[ASN][1000 genomes] |
| rs238455 | 0.98[ASN][1000 genomes] |
| rs238457 | 0.98[ASN][1000 genomes] |
| rs238459 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs238460 | 0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs424277 | 0.96[ASN][1000 genomes] |
| rs439538 | 0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869164 | chr4:102483189-103213842 | Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | nsv428447 | chr4:103103730-103262107 | Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:103096400-103105800 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
