Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:103087412..103089274-chr4:103106235..103108167,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs151387	0.92[ASN][1000 genomes]
rs151477	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs151478	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs151483	0.97[ASN][1000 genomes]
rs236743	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs236744	0.92[ASN][1000 genomes]
rs236746	0.92[ASN][1000 genomes]
rs236747	0.86[ASN][1000 genomes]
rs236748	0.83[ASN][1000 genomes]
rs236749	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs236750	0.92[ASN][1000 genomes]
rs236751	0.93[ASN][1000 genomes]
rs236753	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs236771	0.92[ASN][1000 genomes]
rs236772	0.92[ASN][1000 genomes]
rs236773	0.91[ASN][1000 genomes]
rs238450	0.87[ASN][1000 genomes]
rs238455	0.97[ASN][1000 genomes]
rs238457	0.97[ASN][1000 genomes]
rs238458	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs238459	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs424277	0.98[ASN][1000 genomes]
rs439538	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv428447	chr4:103103730-103262107	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103105800-103111000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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