Variant report

Variant	rs151479
Chromosome Location	chr4:103081402-103081403
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12640056	0.95[CHB][hapmap]
rs151364	0.92[AMR][1000 genomes]
rs151385	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs151386	0.83[EUR][1000 genomes]
rs151480	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs151481	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs151482	0.92[AMR][1000 genomes]
rs151498	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs151499	0.85[EUR][1000 genomes]
rs17031983	0.80[CEU][hapmap];0.95[CHB][hapmap]
rs173137	0.90[AMR][1000 genomes]
rs173138	0.92[AMR][1000 genomes]
rs180877	0.92[AMR][1000 genomes]
rs189328	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs190223	0.92[AMR][1000 genomes]
rs236745	0.85[AMR][1000 genomes]
rs236761	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs236762	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs236768	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs236769	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs236770	0.83[EUR][1000 genomes]
rs236775	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs236776	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs236777	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs236778	0.87[EUR][1000 genomes]
rs236779	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs236780	0.87[EUR][1000 genomes]
rs236781	0.87[EUR][1000 genomes]
rs238478	0.82[ASN][1000 genomes]
rs6842661	0.80[CEU][hapmap];0.95[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv879682	chr4:102859835-103088491	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103072400-103084800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:103079800-103084600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links