Variant report

Variant	rs151498
Chromosome Location	chr4:103059666-103059667
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:103056824..103059784-chr4:103061536..103063846,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11947367	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12640056	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs151385	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs151386	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs151479	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs151480	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs151481	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs151499	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17031983	0.84[ASN][1000 genomes]
rs17031995	0.86[ASN][1000 genomes]
rs189328	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs236761	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs236762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs236768	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs236769	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs236770	0.96[EUR][1000 genomes]
rs236775	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs236776	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs236777	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs236778	0.92[EUR][1000 genomes]
rs236779	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs236780	0.92[EUR][1000 genomes]
rs236781	0.90[EUR][1000 genomes]
rs238477	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs238478	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34184671	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35880229	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6842661	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7693723	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv879682	chr4:102859835-103088491	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103058600-103059800	Weak transcription	Aorta	Aorta
2	chr4:103059200-103059800	Enhancers	HUVEC	blood vessel
3	chr4:103059600-103061200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr4:103059600-103061400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr4:103059600-103061800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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