Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:103064909..103066909-chr4:103071089..103073966,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11947367	0.86[EUR][1000 genomes]
rs12640056	0.93[CEU][hapmap];0.82[CHB][hapmap];0.85[EUR][1000 genomes]
rs151385	0.89[EUR][1000 genomes]
rs151386	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs151479	0.85[EUR][1000 genomes]
rs151480	0.85[EUR][1000 genomes]
rs151481	0.85[EUR][1000 genomes]
rs151498	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17031983	0.93[CEU][hapmap];0.82[CHB][hapmap];0.94[GIH][hapmap];0.82[MEX][hapmap]
rs189328	0.85[EUR][1000 genomes]
rs236761	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs236762	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs236768	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs236769	0.88[EUR][1000 genomes]
rs236770	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs236775	0.85[EUR][1000 genomes]
rs236776	0.84[EUR][1000 genomes]
rs236777	0.85[EUR][1000 genomes]
rs236778	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs236779	0.85[EUR][1000 genomes]
rs236780	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs236781	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs238477	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs238478	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34184671	0.80[EUR][1000 genomes]
rs35880229	0.81[EUR][1000 genomes]
rs6842661	0.93[CEU][hapmap];0.82[CHB][hapmap];0.94[GIH][hapmap];0.82[MEX][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv879682	chr4:102859835-103088491	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs151499	ADH4	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103064600-103069600	Weak transcription	K562	blood

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