Variant report

Variant	rs238477
Chromosome Location	chr4:103044482-103044483
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11933591	0.82[EUR][1000 genomes]
rs11947367	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12640056	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12649238	0.81[EUR][1000 genomes]
rs151385	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs151386	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs151480	0.80[ASN][1000 genomes]
rs151481	0.80[ASN][1000 genomes]
rs151498	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs151499	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17031983	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17031995	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs189328	0.80[ASN][1000 genomes]
rs236761	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs236762	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs236768	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs236769	0.85[ASN][1000 genomes]
rs236770	0.92[EUR][1000 genomes]
rs236775	0.80[ASN][1000 genomes]
rs236776	0.80[ASN][1000 genomes]
rs236777	0.80[ASN][1000 genomes]
rs236778	0.88[EUR][1000 genomes]
rs236779	0.80[ASN][1000 genomes]
rs236780	0.88[EUR][1000 genomes]
rs236781	0.86[EUR][1000 genomes]
rs238478	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34184671	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35880229	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6842661	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7693723	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869164	chr4:102483189-103213842	Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv879682	chr4:102859835-103088491	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:103044400-103045000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links