Variant report
Variant | rs151481 |
---|---|
Chromosome Location | chr4:103082484-103082485 |
allele | G/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr4:103081624..103084608-chr4:103098581..103101497,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs151364 | 0.90[AMR][1000 genomes] |
rs151385 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs151386 | 0.83[EUR][1000 genomes] |
rs151479 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes] |
rs151480 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs151482 | 0.90[AMR][1000 genomes] |
rs151498 | 0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs151499 | 0.85[EUR][1000 genomes] |
rs173137 | 0.89[AMR][1000 genomes] |
rs173138 | 0.90[AMR][1000 genomes] |
rs180877 | 0.90[AMR][1000 genomes] |
rs189328 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs190223 | 0.90[AMR][1000 genomes] |
rs236745 | 0.84[AMR][1000 genomes] |
rs236761 | 0.85[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs236762 | 0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs236768 | 0.85[EUR][1000 genomes];0.94[ASN][1000 genomes] |
rs236769 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs236770 | 0.83[EUR][1000 genomes] |
rs236775 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs236776 | 0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs236777 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs236778 | 0.89[EUR][1000 genomes] |
rs236779 | 0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs236780 | 0.89[EUR][1000 genomes] |
rs236781 | 0.89[EUR][1000 genomes] |
rs238477 | 0.80[ASN][1000 genomes] |
rs238478 | 0.83[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869164 | chr4:102483189-103213842 | Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
2 | nsv879682 | chr4:102859835-103088491 | Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:103072400-103084800 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
2 | chr4:103079800-103084600 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |