Variant report

Variant	rs1515085
Chromosome Location	chr11:83958349-83958350
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1022307	0.95[EUR][1000 genomes]
rs1454024	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1515087	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1515093	0.90[EUR][1000 genomes]
rs1531006	0.95[EUR][1000 genomes]
rs1567972	0.95[EUR][1000 genomes]
rs7929400	0.90[EUR][1000 genomes]
rs7937254	0.90[EUR][1000 genomes]
rs963258	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv415	chr11:83924941-83969603	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83945400-83961200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:83953400-83958400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:83953400-83958600	Weak transcription	Brain Substantia Nigra	brain
4	chr11:83954600-83960200	Enhancers	Liver	Liver
5	chr11:83955600-83959600	Enhancers	Brain Hippocampus Middle	brain
6	chr11:83956200-83960200	Weak transcription	GM12878-XiMat	blood
7	chr11:83957200-83959800	Weak transcription	Aorta	Aorta
8	chr11:83957400-83958800	Enhancers	Brain Angular Gyrus	brain
9	chr11:83957600-83959600	Enhancers	Brain Anterior Caudate	brain
10	chr11:83957800-83959400	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr11:83958200-83958400	Enhancers	Brain Germinal Matrix	brain
12	chr11:83958200-83959200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:83958200-83961200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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