Variant report

Variant	rs1567972
Chromosome Location	chr11:83975245-83975246
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1022307	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1454024	0.95[EUR][1000 genomes]
rs1515085	0.95[EUR][1000 genomes]
rs1515087	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1515093	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1531006	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7929400	0.95[EUR][1000 genomes]
rs7937254	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs896997	1.00[CEU][hapmap]
rs963258	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83972000-83979400	Enhancers	Brain Substantia Nigra	brain
2	chr11:83974000-83978400	Enhancers	Brain Anterior Caudate	brain
3	chr11:83974200-83975400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:83974800-83975400	Active TSS	Brain Hippocampus Middle	brain
5	chr11:83974800-83975400	Active TSS	Stomach Smooth Muscle	stomach
6	chr11:83974800-83975600	Active TSS	Brain Angular Gyrus	brain
7	chr11:83975000-83975600	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr11:83975000-83975800	Enhancers	Colon Smooth Muscle	Colon
9	chr11:83975200-83975600	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr11:83975200-83982600	Enhancers	Brain Cingulate Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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