Variant report

Variant	rs1515087
Chromosome Location	chr11:83952477-83952478
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:83941713..83944829-chr11:83950244..83953336,4	MCF-7	breast:
2	chr11:83951528..83953158-chr11:83957231..83960545,3	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1022307	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1454024	1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1515085	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1515093	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1531006	1.00[EUR][1000 genomes]
rs1567972	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7929400	0.95[EUR][1000 genomes]
rs7937254	0.95[EUR][1000 genomes]
rs896997	1.00[CEU][hapmap]
rs963258	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv415	chr11:83924941-83969603	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83945400-83961200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:83945800-83957400	Weak transcription	Brain Angular Gyrus	brain
3	chr11:83946200-83952800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:83946200-83953000	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:83946400-83952600	Weak transcription	Brain Anterior Caudate	brain
6	chr11:83951200-83953400	Enhancers	Fetal Intestine Large	intestine
7	chr11:83951800-83952800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:83951800-83953400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr11:83952000-83953200	Enhancers	H1 Cell Line	embryonic stem cell
10	chr11:83952000-83953200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr11:83952000-83953200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr11:83952000-83953200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr11:83952000-83953400	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr11:83952000-83953400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr11:83952000-83953400	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr11:83952000-83953400	Enhancers	Liver	Liver
17	chr11:83952200-83952800	Weak transcription	Brain Cingulate Gyrus	brain
18	chr11:83952200-83953000	Weak transcription	Brain Substantia Nigra	brain
19	chr11:83952400-83952600	Enhancers	H9 Cell Line	embryonic stem cell
20	chr11:83952400-83953000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
21	chr11:83952400-83957000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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