Variant report

Variant	rs963258
Chromosome Location	chr11:83944371-83944372
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1022307	0.95[EUR][1000 genomes]
rs1454024	1.00[CEU][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1515085	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1515087	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1515093	0.90[EUR][1000 genomes]
rs1531006	0.95[EUR][1000 genomes]
rs1567972	0.95[EUR][1000 genomes]
rs4944475	1.00[CEU][hapmap]
rs7929400	1.00[EUR][1000 genomes]
rs7937254	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv948410	chr11:83918339-84812001	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv415	chr11:83924941-83969603	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83935200-83945400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr11:83935400-83944600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr11:83939600-83945200	Weak transcription	Brain Germinal Matrix	brain
4	chr11:83940000-83945000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr11:83940800-83945000	Weak transcription	Brain Angular Gyrus	brain
6	chr11:83941000-83946200	Enhancers	Brain Hippocampus Middle	brain
7	chr11:83943200-83945000	Enhancers	Placenta	Placenta
8	chr11:83944000-83946200	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr11:83944200-83945400	Enhancers	Brain Anterior Caudate	brain
10	chr11:83944200-83946000	Enhancers	Brain Cingulate Gyrus	brain
11	chr11:83944200-83947800	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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