Variant report

Variant	rs1518562
Chromosome Location	chr11:93761238-93761239
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1401182	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1401183	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2460045	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2460054	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2460055	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2511386	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2511401	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2511402	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4084250	0.90[EUR][1000 genomes]
rs4753116	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4753117	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4753118	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4753120	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4753530	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs949452	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049467	chr11:93651025-93778717	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv898183	chr11:93725384-93906735	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv898184	chr11:93741612-93969726	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93759400-93761400	Weak transcription	NH-A	brain
2	chr11:93760400-93764000	Enhancers	HMEC	breast
3	chr11:93760400-93764000	Enhancers	NHEK	skin
4	chr11:93760600-93762200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:93760600-93763200	Enhancers	Placenta Amnion	Placenta Amnion
6	chr11:93760800-93763600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:93761000-93762400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr11:93761200-93761800	Enhancers	Fetal Lung	lung
9	chr11:93761200-93762600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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