Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10765648	0.91[ASN][1000 genomes]
rs10831159	0.89[ASN][1000 genomes]
rs11020630	0.90[ASN][1000 genomes]
rs11020631	0.90[ASN][1000 genomes]
rs11020634	0.90[ASN][1000 genomes]
rs11020640	0.89[ASN][1000 genomes]
rs12362164	0.89[ASN][1000 genomes]
rs1401182	0.82[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1401183	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1518562	0.90[EUR][1000 genomes]
rs1518563	0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs1829371	0.95[JPT][hapmap];0.89[ASN][1000 genomes]
rs2460045	0.88[EUR][1000 genomes]
rs2460054	0.90[EUR][1000 genomes]
rs2460055	0.81[CEU][hapmap];0.89[EUR][1000 genomes]
rs2511386	0.87[EUR][1000 genomes]
rs2511401	0.89[EUR][1000 genomes]
rs2511402	0.90[EUR][1000 genomes]
rs4753115	0.88[ASN][1000 genomes]
rs4753116	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4753117	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4753118	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4753120	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4753530	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs949452	0.85[CEU][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049467	chr11:93651025-93778717	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv898183	chr11:93725384-93906735	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv898184	chr11:93741612-93969726	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93755600-93760600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:93755800-93761200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:93758000-93760600	Weak transcription	Fetal Lung	lung
4	chr11:93758000-93760800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr11:93758800-93760200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr11:93759000-93760400	Weak transcription	HMEC	breast
7	chr11:93759200-93760400	ZNF genes & repeats	NHEK	skin
8	chr11:93759400-93760600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:93759400-93761400	Weak transcription	NH-A	brain

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