Variant report

Variant	rs4753120
Chromosome Location	chr11:93779745-93779746
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1401182	0.89[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1401183	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1518562	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2460045	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2460054	0.86[EUR][1000 genomes]
rs2460055	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2511386	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2511401	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2511402	0.86[EUR][1000 genomes]
rs4084250	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4753116	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4753117	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4753118	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4753530	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs949452	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898183	chr11:93725384-93906735	Strong transcription Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv898184	chr11:93741612-93969726	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93768000-93779800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr11:93769800-93787800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:93778200-93784000	Weak transcription	HMEC	breast
4	chr11:93779000-93780200	Enhancers	Duodenum Mucosa	Duodenum
5	chr11:93779400-93780200	Enhancers	Fetal Intestine Large	intestine
6	chr11:93779400-93780400	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr11:93779400-93780400	Enhancers	Placenta	Placenta
8	chr11:93779600-93780400	Enhancers	Fetal Intestine Small	intestine
9	chr11:93779600-93780400	Flanking Active TSS	K562	blood
10	chr11:93779600-93780400	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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