Variant report

Variant	rs1519840
Chromosome Location	chr8:129882442-129882443
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:129880648..129882498-chr8:129885129..129887830,2	K562	blood:
2	chr8:129878873..129881112-chr8:129881741..129884417,2	K562	blood:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1519858	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16903647	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16903648	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16903668	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16903677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16903682	1.00[ASN][1000 genomes]
rs2090682	0.85[AFR][1000 genomes]
rs35208579	0.86[AFR][1000 genomes]
rs35643497	1.00[ASN][1000 genomes]
rs35989243	1.00[ASN][1000 genomes]
rs59460028	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6982834	0.95[AFR][1000 genomes]
rs6994591	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7014227	1.00[EUR][1000 genomes]
rs7015615	0.84[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73708224	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73708238	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73708240	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs756123	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7817073	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7820704	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821002	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7823984	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7846441	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv982118	chr8:129880035-129884391	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:129874600-129886200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:129875000-129887000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr8:129876200-129886200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr8:129877000-129885000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr8:129881000-129886600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:129881400-129886400	Weak transcription	NH-A	brain
7	chr8:129881400-129886400	Weak transcription	Osteobl	bone
8	chr8:129881600-129885800	Weak transcription	NHDF-Ad	bronchial
9	chr8:129881600-129886600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr8:129881600-129894200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:129882400-129882600	Enhancers	H1 Cell Line	embryonic stem cell
12	chr8:129882400-129882800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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