Variant report

Variant	rs1522088
Chromosome Location	chr11:33792914-33792915
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1402956	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1632527	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16924726	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2177123	0.83[AMR][1000 genomes]
rs2231453	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2421209	0.86[AMR][1000 genomes]
rs2686246	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs704700	0.90[JPT][hapmap]
rs831593	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs831597	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs831598	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs831601	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs831602	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs831619	0.90[JPT][hapmap]
rs831623	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs831626	0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[ASN][1000 genomes]
rs831628	0.90[JPT][hapmap]
rs831637	0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523356	chr11:33777334-33797408	Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33758800-33795000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:33759000-33795200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:33765400-33793800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr11:33769600-33795000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:33778800-33794600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr11:33779600-33795000	Weak transcription	Colonic Mucosa	Colon
7	chr11:33782200-33793400	Weak transcription	Right Ventricle	heart
8	chr11:33786200-33793200	Weak transcription	K562	blood
9	chr11:33786200-33793400	Weak transcription	A549	lung
10	chr11:33786200-33793600	Weak transcription	Fetal Heart	heart
11	chr11:33786200-33793600	Weak transcription	Small Intestine	intestine
12	chr11:33786600-33794000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr11:33787600-33794400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr11:33787600-33795000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr11:33787800-33794000	Weak transcription	Muscle Satellite Cultured Cells	--
16	chr11:33787800-33794200	Weak transcription	Fetal Intestine Small	intestine
17	chr11:33788000-33793600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr11:33788000-33794000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr11:33788000-33794200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr11:33788000-33794800	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr11:33788200-33794400	Weak transcription	Fetal Brain Male	brain
22	chr11:33788400-33793200	Weak transcription	Brain Angular Gyrus	brain
23	chr11:33788400-33793400	Weak transcription	Pancreas	Pancrea
24	chr11:33788400-33793600	Weak transcription	Stomach Mucosa	stomach
25	chr11:33788400-33793600	Weak transcription	Spleen	Spleen
26	chr11:33788400-33794000	Weak transcription	Esophagus	oesophagus
27	chr11:33788400-33794000	Weak transcription	Gastric	stomach
28	chr11:33788600-33794000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr11:33788600-33794200	Weak transcription	Fetal Muscle Leg	muscle
30	chr11:33788800-33794800	Weak transcription	HSMMtube	muscle
31	chr11:33789200-33793400	Weak transcription	Psoas Muscle	Psoas
32	chr11:33789200-33794400	Weak transcription	Fetal Stomach	stomach
33	chr11:33789400-33793200	Weak transcription	Brain Germinal Matrix	brain
34	chr11:33789400-33794000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr11:33789600-33793200	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr11:33789600-33794800	Weak transcription	HUVEC	blood vessel
37	chr11:33789800-33793600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr11:33790200-33794200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr11:33790400-33793400	Weak transcription	Brain Hippocampus Middle	brain
40	chr11:33790400-33793400	Weak transcription	NH-A	brain
41	chr11:33790400-33794000	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr11:33790400-33794000	Weak transcription	Fetal Brain Female	brain
43	chr11:33790400-33794000	Weak transcription	Stomach Smooth Muscle	stomach
44	chr11:33790400-33794200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr11:33790400-33794800	Weak transcription	Primary hematopoietic stem cells	blood
46	chr11:33790400-33795000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr11:33790600-33793000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr11:33790600-33793400	Weak transcription	Colon Smooth Muscle	Colon
49	chr11:33790600-33794000	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr11:33790600-33794000	Weak transcription	Left Ventricle	heart

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