Variant report

Variant	rs2177123
Chromosome Location	chr11:33798471-33798472
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr11:33798268-33798698	H1-hESC	embryonic stem cell:	n/a	chr11:33798479-33798488
2	MAX	chr11:33798356-33798704	H1-hESC	embryonic stem cell:	n/a	chr11:33798479-33798488

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:33756399..33761777-chr11:33794455..33799644,9	K562	blood:
2	chr11:33756496..33759717-chr11:33794342..33798618,4	K562	blood:

Variant related genes	Relation type
FBXO3	TF binding region
ENSG00000085063	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11032350	1.00[YRI][hapmap]
rs12282096	0.94[CHB][hapmap];0.90[CHD][hapmap];0.84[ASN][1000 genomes]
rs12361553	0.94[CHB][hapmap];0.86[CHD][hapmap];0.87[ASN][1000 genomes]
rs12364970	1.00[YRI][hapmap]
rs1402956	0.83[AMR][1000 genomes]
rs1464484	0.84[ASN][1000 genomes]
rs1522088	0.83[AMR][1000 genomes]
rs1546727	1.00[YRI][hapmap]
rs16924726	0.82[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes]
rs2056396	0.94[CHB][hapmap]
rs2140066	0.84[ASN][1000 genomes]
rs2222397	1.00[CHB][hapmap];0.86[JPT][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2421209	1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2686246	0.82[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes]
rs4756031	0.87[CHB][hapmap]
rs6484674	0.92[EUR][1000 genomes]
rs7125621	0.94[CHB][hapmap];0.86[CHD][hapmap];0.82[ASN][1000 genomes]
rs7927218	0.94[CHB][hapmap];0.84[ASN][1000 genomes]
rs831593	0.83[AMR][1000 genomes]
rs831601	0.83[AMR][1000 genomes]
rs831602	0.83[AMR][1000 genomes]
rs939804	0.94[CHB][hapmap];0.83[CHD][hapmap]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33796800-33799800	Weak transcription	Right Atrium	heart
2	chr11:33796800-33799800	Weak transcription	Right Ventricle	heart
3	chr11:33797000-33799600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:33797000-33799800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:33797000-33799800	Weak transcription	Fetal Brain Female	brain
6	chr11:33797200-33799400	Weak transcription	Brain Germinal Matrix	brain
7	chr11:33797200-33799800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:33797200-33799800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:33797200-33799800	Weak transcription	Left Ventricle	heart
10	chr11:33797200-33800000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:33797200-33800800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr11:33797200-33801600	Weak transcription	Aorta	Aorta
13	chr11:33797200-33801600	Weak transcription	Ovary	ovary
14	chr11:33797400-33799600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:33797400-33800000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:33797600-33799600	Weak transcription	HSMMtube	muscle
17	chr11:33797600-33799600	Weak transcription	NH-A	brain
18	chr11:33797600-33799800	Weak transcription	HSMM	muscle
19	chr11:33797600-33799800	Weak transcription	NHDF-Ad	bronchial
20	chr11:33797600-33801400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:33797600-33801400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:33797800-33799600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:33797800-33800000	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr11:33798000-33799600	Weak transcription	NHLF	lung
25	chr11:33798000-33800600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
26	chr11:33798200-33798800	Enhancers	GM12878-XiMat	blood
27	chr11:33798200-33800200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr11:33798200-33800400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr11:33798400-33798600	Enhancers	H1 Cell Line	embryonic stem cell
30	chr11:33798400-33798600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr11:33798400-33802000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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