Variant report

Variant	rs12361553
Chromosome Location	chr11:33802703-33802704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:33796395..33799145-chr11:33801691..33803227,2	MCF-7	breast:
2	chr11:33802470..33804969-chr11:33808877..33811819,2	K562	blood:
3	chr11:33793454..33797702-chr11:33802064..33806582,4	K562	blood:
4	chr11:33800180..33801974-chr11:33802206..33805134,2	K562	blood:

Variant related genes	Relation type
ENSG00000254508	Chromatin interaction
ENSG00000255161	Chromatin interaction
ENSG00000110429	Chromatin interaction
ENSG00000255272	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10836108	0.85[AMR][1000 genomes]
rs11032363	0.82[CEU][hapmap]
rs11032380	1.00[CEU][hapmap];0.82[MKK][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes]
rs12282096	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12420267	0.87[CEU][hapmap]
rs1402953	0.82[CEU][hapmap]
rs1402957	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1464484	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1578986	0.82[CEU][hapmap];0.84[TSI][hapmap]
rs2056396	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2140066	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2177123	0.94[CHB][hapmap];0.86[CHD][hapmap];0.87[ASN][1000 genomes]
rs2222397	0.94[CHB][hapmap];0.80[ASN][1000 genomes]
rs2421209	0.94[CHB][hapmap];0.96[CHD][hapmap];0.86[ASN][1000 genomes]
rs2901376	0.86[CEU][hapmap]
rs4755340	0.95[CEU][hapmap]
rs4756025	1.00[CEU][hapmap]
rs4756031	0.94[CHB][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs704702	0.82[CEU][hapmap]
rs704703	0.82[CEU][hapmap];0.84[TSI][hapmap]
rs7125621	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7927218	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs831594	0.82[CEU][hapmap];0.84[TSI][hapmap]
rs939804	0.95[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];0.90[JPT][hapmap];0.95[LWK][hapmap];0.95[MEX][hapmap];0.94[MKK][hapmap];0.84[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs953871	0.87[CEU][hapmap];0.84[TSI][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12361553	FBXO3	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33799800-33802800	Enhancers	Left Ventricle	heart
2	chr11:33801800-33802800	Enhancers	HSMMtube	muscle
3	chr11:33802200-33818200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:33802600-33802800	Enhancers	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links