Variant report

Variant	rs10836108
Chromosome Location	chr11:33782589-33782590
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:33782349..33784832-chr11:33794680..33796860,3	MCF-7	breast:
2	chr11:33756710..33758910-chr11:33782406..33785042,2	K562	blood:
3	chr11:33770157..33771745-chr11:33780759..33782708,2	K562	blood:

Variant related genes	Relation type
ENSG00000110429	Chromatin interaction
ENSG00000085063	Chromatin interaction
ENSG00000254508	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1096558	0.87[ASN][1000 genomes]
rs1096559	0.87[ASN][1000 genomes]
rs1096563	0.87[ASN][1000 genomes]
rs11032363	0.88[EUR][1000 genomes]
rs11032366	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11032374	0.90[EUR][1000 genomes]
rs1112840	0.90[EUR][1000 genomes]
rs12146621	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12361553	0.85[AMR][1000 genomes]
rs1402953	0.88[EUR][1000 genomes]
rs1402957	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1464486	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1464487	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1522087	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1578986	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1738547	0.87[ASN][1000 genomes]
rs1738548	0.95[ASN][1000 genomes]
rs2272065	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2901376	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3181274	0.88[EUR][1000 genomes]
rs34944910	0.90[EUR][1000 genomes]
rs35162575	0.90[EUR][1000 genomes]
rs704702	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs704703	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs831594	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs831596	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs831603	0.89[ASN][1000 genomes]
rs953871	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523356	chr11:33777334-33797408	Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33758800-33795000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:33759000-33795200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:33760400-33785200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr11:33763200-33792200	Strong transcription	Fetal Thymus	thymus
5	chr11:33763200-33792400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr11:33764200-33792000	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr11:33764400-33791200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr11:33764400-33792200	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr11:33764400-33792400	Strong transcription	Primary T cells fromperipheralblood	blood
10	chr11:33764400-33792400	Strong transcription	Monocytes-CD14+_RO01746	blood
11	chr11:33764600-33785200	Strong transcription	Primary T helper cells PMA-I stimulated	--
12	chr11:33765200-33785800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:33765400-33793800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr11:33766600-33787600	Weak transcription	Stomach Mucosa	stomach
15	chr11:33767400-33791400	Strong transcription	Placenta	Placenta
16	chr11:33767600-33785800	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr11:33767600-33792400	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr11:33767800-33784000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr11:33767800-33784600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr11:33767800-33785800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr11:33767800-33792200	Strong transcription	Adipose Nuclei	Adipose
22	chr11:33767800-33792400	Strong transcription	Primary B cells from peripheral blood	blood
23	chr11:33768000-33785800	Weak transcription	Small Intestine	intestine
24	chr11:33769600-33783800	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr11:33769600-33795000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr11:33770200-33791200	Strong transcription	Liver	Liver
27	chr11:33770400-33789200	Weak transcription	NHLF	lung
28	chr11:33770800-33791600	Strong transcription	Duodenum Mucosa	Duodenum
29	chr11:33772200-33785800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
30	chr11:33772600-33785400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr11:33774400-33782600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr11:33774600-33782600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
33	chr11:33775200-33786200	Weak transcription	Esophagus	oesophagus
34	chr11:33775400-33785200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
35	chr11:33775400-33785800	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr11:33775800-33785800	Weak transcription	Fetal Heart	heart
37	chr11:33776800-33792200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr11:33777000-33792200	Strong transcription	Fetal Lung	lung
39	chr11:33777200-33783800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr11:33777200-33792400	Strong transcription	Primary B cells from cord blood	blood
41	chr11:33777400-33783800	Strong transcription	Fetal Muscle Leg	muscle
42	chr11:33777600-33786200	Weak transcription	Spleen	Spleen
43	chr11:33778200-33782600	Strong transcription	Cortex derived primary cultured neurospheres	brain
44	chr11:33778200-33792200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
45	chr11:33778600-33784600	Weak transcription	NHDF-Ad	bronchial
46	chr11:33778800-33783200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr11:33778800-33785200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr11:33778800-33794600	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr11:33779400-33786000	Weak transcription	Lung	lung
50	chr11:33779600-33795000	Weak transcription	Colonic Mucosa	Colon

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