Variant report

Variant	rs1402957
Chromosome Location	chr11:33795782-33795783
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	PML	chr11:33795556-33796097	GM12878	blood:	n/a	n/a
2	POLR2A	chr11:33795742-33796363	A549	lung:	n/a	n/a
3	JUND	chr11:33795659-33795900	H1-hESC	embryonic stem cell:	n/a	n/a
4	ZBTB7A	chr11:33795363-33796403	K562	blood:	n/a	n/a
5	EGR1	chr11:33795654-33795867	GM12878	blood:	n/a	chr11:33795765-33795778 chr11:33795762-33795776 chr11:33795766-33795775
6	UBTF	chr11:33795631-33796323	K562	blood:	n/a	n/a
7	MAX	chr11:33795401-33795867	A549	lung:	n/a	n/a
8	MXI1	chr11:33794764-33797035	SK-N-SH	brain:	n/a	chr11:33795490-33795499
9	HCFC1	chr11:33794953-33797412	Hela-S3	cervix:	n/a	n/a
10	HMGN3	chr11:33795457-33796603	K562	blood:	n/a	n/a
11	YY1	chr11:33795395-33796170	A549	lung:	n/a	chr11:33796033-33796053
12	TAF1	chr11:33795628-33796444	ECC-1	luminal epithelium:	n/a	n/a
13	POLR2A	chr11:33795677-33796349	Hela-S3	cervix:	n/a	n/a
14	ELF1	chr11:33795295-33796056	GM12878	blood:	n/a	chr11:33795314-33795327 chr11:33795627-33795639
15	POLR2A	chr11:33795572-33796514	H1-hESC	embryonic stem cell:	n/a	n/a
16	YY1	chr11:33795660-33796047	K562	blood:	n/a	n/a
17	POLR2A	chr11:33795759-33796585	ProgFib	skin:	n/a	n/a
18	POLR2A	chr11:33795703-33796469	GM12892	blood:	n/a	n/a
19	POLR2A	chr11:33795621-33796812	SK-N-MC	brain:	n/a	n/a
20	POLR2A	chr11:33795757-33796088	PANC-1	pancreas:	n/a	n/a
21	REST	chr11:33795750-33796206	HL-60	blood:	n/a	n/a
22	POLR2A	chr11:33795378-33796439	GM18505	blood:	n/a	n/a
23	TAF1	chr11:33795745-33796161	H1-neurons	neurons:	n/a	n/a
24	MAZ	chr11:33795661-33796346	Hela-S3	cervix:	n/a	chr11:33796160-33796170 chr11:33795877-33795887
25	REST	chr11:33795347-33796672	H1-neurons	neurons:	n/a	chr11:33795620-33795633 chr11:33795727-33795740
26	POLR2A	chr11:33795564-33796413	PFSK-1	brain:	n/a	n/a
27	TAF1	chr11:33795704-33796216	A549	lung:	n/a	n/a
28	YY1	chr11:33795334-33796155	GM12891	blood:	n/a	chr11:33796033-33796053
29	POLR2A	chr11:33795778-33796070	HUVEC	blood vessel:	n/a	n/a
30	YY1	chr11:33795345-33796467	HepG2	liver:	n/a	chr11:33796033-33796053
31	RUNX3	chr11:33795561-33795937	GM12878	blood:	n/a	n/a
32	YY1	chr11:33794957-33796345	GM12878	blood:	n/a	chr11:33796033-33796053
33	POLR2A	chr11:33795593-33796604	GM19193	blood:	n/a	n/a
34	YY1	chr11:33795546-33796263	ECC-1	luminal epithelium:	n/a	chr11:33796033-33796053
35	YY1	chr11:33795449-33796216	H1-hESC	embryonic stem cell:	n/a	chr11:33796033-33796053
36	POLR2A	chr11:33795656-33796938	H1-hESC	embryonic stem cell:	n/a	n/a
37	POLR2A	chr11:33795638-33796541	U87	brain:	n/a	n/a
38	POLR2A	chr11:33795737-33796097	GM12892	blood:	n/a	n/a
39	MAX	chr11:33794828-33796614	A549	lung:	n/a	chr11:33796160-33796170 chr11:33795877-33795887
40	CCNT2	chr11:33795454-33796326	K562	blood:	n/a	chr11:33795863-33795872 chr11:33795908-33795917
41	POLR2A	chr11:33795634-33796346	GM12878	blood:	n/a	n/a
42	TBP	chr11:33795554-33796310	K562	blood:	n/a	n/a
43	POLR2A	chr11:33795779-33796432	ECC-1	luminal epithelium:	n/a	n/a
44	MAX	chr11:33795447-33796442	H1-hESC	embryonic stem cell:	n/a	chr11:33796160-33796170 chr11:33795877-33795887
45	POLR2A	chr11:33795658-33796452	GM15510	blood:	n/a	n/a
46	ELF1	chr11:33795639-33796003	K562	blood:	n/a	n/a
47	YY1	chr11:33795625-33796194	HepG2	liver:	n/a	chr11:33796033-33796053
48	ZBTB7A	chr11:33795264-33796461	ECC-1	luminal epithelium:	n/a	n/a
49	MAZ	chr11:33794961-33796438	GM12878	blood:	n/a	chr11:33796160-33796170 chr11:33795877-33795887
50	SIN3AK20	chr11:33795744-33796089	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:33795562..33796149-chr20:35402028..35402855,2	Hela-S3	cervix:
2	chr11:33757743..33759681-chr11:33794774..33797554,2	MCF-7	breast:
3	chr11:33756399..33761777-chr11:33794455..33799644,9	K562	blood:
4	chr11:33756496..33759717-chr11:33794342..33798618,4	K562	blood:
5	chr11:33720701..33723094-chr11:33794886..33797220,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000255272	TF binding region
ENSG00000254508	TF binding region
FBXO3	TF binding region
ENSG00000149636	Chromatin interaction
ENSG00000205177	Chromatin interaction
ENSG00000085063	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10836108	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11032380	0.83[EUR][1000 genomes]
rs12282096	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12361553	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1464484	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1464487	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1522087	0.83[EUR][1000 genomes]
rs1578986	0.83[EUR][1000 genomes]
rs2056396	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2140066	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2901376	0.83[EUR][1000 genomes]
rs4756031	0.85[ASN][1000 genomes]
rs704702	0.81[EUR][1000 genomes]
rs704703	0.81[EUR][1000 genomes]
rs7125621	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7927218	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs831594	0.81[EUR][1000 genomes]
rs939804	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs953871	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523356	chr11:33777334-33797408	Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33794400-33795800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr11:33794600-33796600	Active TSS	A549	lung
3	chr11:33794600-33796800	Active TSS	Rectal Smooth Muscle	rectum
4	chr11:33794800-33795800	Flanking Active TSS	Primary B cells from cord blood	blood
5	chr11:33794800-33795800	Flanking Active TSS	Primary hematopoietic stem cells	blood
6	chr11:33794800-33796600	Active TSS	Brain Inferior Temporal Lobe	brain
7	chr11:33794800-33796800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
8	chr11:33795000-33795800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
9	chr11:33795000-33796400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:33795000-33796400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:33795000-33796400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr11:33795000-33796400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
13	chr11:33795000-33796600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:33795000-33796600	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
15	chr11:33795000-33796600	Active TSS	Breast Myoepithelial Primary Cells	Breast
16	chr11:33795000-33796600	Active TSS	Primary T helper naive cells from peripheral blood	blood
17	chr11:33795000-33796600	Active TSS	Primary T killer memory cells from peripheral blood	blood
18	chr11:33795000-33796600	Active TSS	Brain Angular Gyrus	brain
19	chr11:33795000-33796600	Active TSS	Gastric	stomach
20	chr11:33795000-33796600	Active TSS	Placenta Amnion	Placenta Amnion
21	chr11:33795000-33796800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
22	chr11:33795000-33796800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr11:33795000-33796800	Active TSS	Right Atrium	heart
24	chr11:33795000-33797000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
25	chr11:33795000-33797000	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
26	chr11:33795000-33797000	Active TSS	Pancreatic Islets	Pancreatic Islet
27	chr11:33795000-33797000	Active TSS	Ovary	ovary
28	chr11:33795000-33797200	Active TSS	Aorta	Aorta
29	chr11:33795200-33796200	Active TSS	Fetal Intestine Large	intestine
30	chr11:33795200-33796200	Active TSS	Fetal Intestine Small	intestine
31	chr11:33795200-33796400	Active TSS	H1 Cell Line	embryonic stem cell
32	chr11:33795200-33796400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr11:33795200-33796400	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
34	chr11:33795200-33796400	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
35	chr11:33795200-33796400	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
36	chr11:33795200-33796400	Active TSS	Muscle Satellite Cultured Cells	--
37	chr11:33795200-33796400	Active TSS	Brain Hippocampus Middle	brain
38	chr11:33795200-33796400	Active TSS	Esophagus	oesophagus
39	chr11:33795200-33796400	Active TSS	Stomach Mucosa	stomach
40	chr11:33795200-33796400	Active TSS	GM12878-XiMat	blood
41	chr11:33795200-33796600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr11:33795200-33796600	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr11:33795200-33796600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
44	chr11:33795200-33796600	Active TSS	Brain Anterior Caudate	brain
45	chr11:33795200-33796600	Active TSS	Brain Cingulate Gyrus	brain
46	chr11:33795200-33796600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
47	chr11:33795200-33796600	Active TSS	Brain Substantia Nigra	brain
48	chr11:33795200-33796600	Active TSS	Fetal Heart	heart
49	chr11:33795200-33796600	Active TSS	Lung	lung
50	chr11:33795200-33796600	Active TSS	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links