Variant report

Variant	rs2140066
Chromosome Location	chr11:33799160-33799161
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:33795039..33797877-chr11:33799009..33801476,4	K562	blood:
2	chr11:33756399..33761777-chr11:33794455..33799644,9	K562	blood:
3	chr11:33783005..33784901-chr11:33798617..33800423,2	K562	blood:

Variant related genes	Relation type
ENSG00000254508	Chromatin interaction
ENSG00000255272	Chromatin interaction
ENSG00000085063	Chromatin interaction
ENSG00000110429	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11032380	0.86[EUR][1000 genomes]
rs12282096	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12361553	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1402957	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1464484	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1464487	0.85[AMR][1000 genomes]
rs1522087	0.84[AMR][1000 genomes]
rs1578986	0.84[AMR][1000 genomes]
rs2056396	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2177123	0.84[ASN][1000 genomes]
rs2421209	0.83[ASN][1000 genomes]
rs2901376	0.84[AMR][1000 genomes]
rs4756031	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs704702	0.84[AMR][1000 genomes]
rs704703	0.84[AMR][1000 genomes]
rs7125621	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7927218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs831594	0.84[AMR][1000 genomes]
rs939804	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs953871	0.85[AMR][1000 genomes]

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33796800-33799800	Weak transcription	Right Atrium	heart
2	chr11:33796800-33799800	Weak transcription	Right Ventricle	heart
3	chr11:33797000-33799600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:33797000-33799800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr11:33797000-33799800	Weak transcription	Fetal Brain Female	brain
6	chr11:33797200-33799400	Weak transcription	Brain Germinal Matrix	brain
7	chr11:33797200-33799800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:33797200-33799800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr11:33797200-33799800	Weak transcription	Left Ventricle	heart
10	chr11:33797200-33800000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:33797200-33800800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr11:33797200-33801600	Weak transcription	Aorta	Aorta
13	chr11:33797200-33801600	Weak transcription	Ovary	ovary
14	chr11:33797400-33799600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:33797400-33800000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:33797600-33799600	Weak transcription	HSMMtube	muscle
17	chr11:33797600-33799600	Weak transcription	NH-A	brain
18	chr11:33797600-33799800	Weak transcription	HSMM	muscle
19	chr11:33797600-33799800	Weak transcription	NHDF-Ad	bronchial
20	chr11:33797600-33801400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:33797600-33801400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr11:33797800-33799600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr11:33797800-33800000	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr11:33798000-33799600	Weak transcription	NHLF	lung
25	chr11:33798000-33800600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
26	chr11:33798200-33800200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr11:33798200-33800400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr11:33798400-33802000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr11:33798600-33800400	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr11:33798800-33799200	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr11:33798800-33799200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr11:33798800-33799200	Weak transcription	GM12878-XiMat	blood
33	chr11:33799000-33799200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood

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