Variant report

Variant	rs7927218
Chromosome Location	chr11:33798082-33798083
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:33756399..33761777-chr11:33794455..33799644,9	K562	blood:
2	chr11:33756496..33759717-chr11:33794342..33798618,4	K562	blood:

Variant related genes	Relation type
ENSG00000085063	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11032363	0.82[CEU][hapmap]
rs11032380	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs12282096	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12361553	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12420267	0.87[CEU][hapmap]
rs1402953	0.82[CEU][hapmap]
rs1402957	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1464484	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1464487	0.85[AMR][1000 genomes]
rs1522087	0.84[AMR][1000 genomes]
rs1533800	1.00[YRI][hapmap]
rs1533801	0.93[YRI][hapmap]
rs1578986	0.82[CEU][hapmap];0.84[AMR][1000 genomes]
rs2056396	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2140066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2177123	0.94[CHB][hapmap];0.84[ASN][1000 genomes]
rs2222397	0.94[CHB][hapmap]
rs2421209	0.94[CHB][hapmap];0.83[ASN][1000 genomes]
rs2901376	0.87[CEU][hapmap];0.84[AMR][1000 genomes]
rs4755340	0.96[CEU][hapmap]
rs4756025	0.94[CEU][hapmap]
rs4756031	0.94[CHB][hapmap];0.88[JPT][hapmap];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs704702	0.83[CEU][hapmap];0.84[AMR][1000 genomes]
rs704703	0.82[CEU][hapmap];0.84[AMR][1000 genomes]
rs7125621	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs831594	0.82[CEU][hapmap];0.84[AMR][1000 genomes]
rs939804	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs953871	0.87[CEU][hapmap];0.85[AMR][1000 genomes]

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33796400-33798200	Flanking Active TSS	GM12878-XiMat	blood
2	chr11:33796800-33799800	Weak transcription	Right Atrium	heart
3	chr11:33796800-33799800	Weak transcription	Right Ventricle	heart
4	chr11:33797000-33799600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:33797000-33799800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:33797000-33799800	Weak transcription	Fetal Brain Female	brain
7	chr11:33797200-33798200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:33797200-33798200	Enhancers	Colon Smooth Muscle	Colon
9	chr11:33797200-33799400	Weak transcription	Brain Germinal Matrix	brain
10	chr11:33797200-33799800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr11:33797200-33799800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr11:33797200-33799800	Weak transcription	Left Ventricle	heart
13	chr11:33797200-33800000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:33797200-33800800	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr11:33797200-33801600	Weak transcription	Aorta	Aorta
16	chr11:33797200-33801600	Weak transcription	Ovary	ovary
17	chr11:33797400-33799600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:33797400-33800000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr11:33797600-33799600	Weak transcription	HSMMtube	muscle
20	chr11:33797600-33799600	Weak transcription	NH-A	brain
21	chr11:33797600-33799800	Weak transcription	HSMM	muscle
22	chr11:33797600-33799800	Weak transcription	NHDF-Ad	bronchial
23	chr11:33797600-33801400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr11:33797600-33801400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr11:33797800-33799600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:33797800-33800000	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr11:33798000-33799600	Weak transcription	NHLF	lung
28	chr11:33798000-33800600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood

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