Variant report

Variant	rs939804
Chromosome Location	chr11:33828847-33828848
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:33828509..33830233-chr11:34379250..34381956,2	MCF-7	breast:
2	chr11:33827983..33829777-chr11:33833122..33835279,2	K562	blood:
3	chr11:33824257..33826244-chr11:33828062..33830421,2	K562	blood:
4	chr11:33827463..33830110-chr11:33848684..33852679,4	K562	blood:

Variant related genes	Relation type
ENSG00000166016	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11032363	0.81[MKK][hapmap]
rs11032380	0.95[CEU][hapmap];0.87[MKK][hapmap]
rs11032400	0.84[EUR][1000 genomes]
rs12282096	0.95[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.84[TSI][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12361553	0.95[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.90[GIH][hapmap];0.90[JPT][hapmap];0.95[LWK][hapmap];0.95[MEX][hapmap];0.94[MKK][hapmap];0.84[TSI][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12420267	0.91[CEU][hapmap]
rs12805407	0.82[EUR][1000 genomes]
rs1402957	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1464484	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17761158	0.81[MKK][hapmap]
rs2056396	0.95[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2140066	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2177123	0.94[CHB][hapmap];0.83[CHD][hapmap]
rs2222397	0.94[CHB][hapmap];0.82[ASN][1000 genomes]
rs2421209	0.94[CHB][hapmap];0.93[CHD][hapmap]
rs2901376	0.81[CEU][hapmap]
rs4755340	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs4756025	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs4756031	0.94[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6416077	0.83[EUR][1000 genomes]
rs6484676	0.83[EUR][1000 genomes]
rs6484677	0.83[EUR][1000 genomes]
rs6484678	0.83[EUR][1000 genomes]
rs7125621	0.95[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.90[JPT][hapmap];0.84[TSI][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7131427	0.83[EUR][1000 genomes]
rs7927218	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7928022	0.83[EUR][1000 genomes]
rs953871	0.83[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs939804	FBXO3	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33824600-33830000	Weak transcription	Fetal Brain Male	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links