Variant report
| Variant | rs11032400 |
|---|---|
| Chromosome Location | chr11:33839907-33839908 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:33833344..33836740-chr11:33839471..33842474,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10836118 | 0.92[EUR][1000 genomes] |
| rs11032410 | 0.92[EUR][1000 genomes] |
| rs11032411 | 0.92[EUR][1000 genomes] |
| rs11032412 | 0.92[EUR][1000 genomes] |
| rs11032413 | 0.81[EUR][1000 genomes] |
| rs12282096 | 0.81[CHB][hapmap] |
| rs12361553 | 0.81[CHB][hapmap] |
| rs12420267 | 0.86[CEU][hapmap];0.84[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs12797549 | 0.80[EUR][1000 genomes] |
| rs12797630 | 0.92[EUR][1000 genomes] |
| rs12805407 | 0.85[EUR][1000 genomes] |
| rs2056396 | 0.81[CHB][hapmap] |
| rs4756025 | 0.82[CEU][hapmap] |
| rs4756031 | 0.81[EUR][1000 genomes] |
| rs4756052 | 0.80[EUR][1000 genomes] |
| rs4756053 | 0.92[EUR][1000 genomes] |
| rs6416077 | 0.86[EUR][1000 genomes] |
| rs6484674 | 0.86[ASN][1000 genomes] |
| rs6484676 | 0.86[EUR][1000 genomes] |
| rs6484677 | 0.86[EUR][1000 genomes] |
| rs6484678 | 0.86[EUR][1000 genomes] |
| rs7125621 | 0.81[CHB][hapmap] |
| rs7131427 | 0.86[EUR][1000 genomes] |
| rs7927218 | 0.81[CHB][hapmap] |
| rs7928022 | 0.86[EUR][1000 genomes] |
| rs7944285 | 0.91[EUR][1000 genomes] |
| rs7944476 | 0.92[EUR][1000 genomes] |
| rs7944954 | 0.92[EUR][1000 genomes] |
| rs7948037 | 0.92[EUR][1000 genomes] |
| rs939804 | 0.81[CHB][hapmap];0.90[GIH][hapmap];0.81[MEX][hapmap];0.84[EUR][1000 genomes] |
mRNA abundance (count:1)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs11032400 | FBXO3 | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:33839200-33840000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
