Variant report

Variant	rs12797549
Chromosome Location	chr11:33851020-33851021
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:33829491..33830362-chr11:33850833..33851690,3	MCF-7	breast:
2	chr11:33850709..33851275-chr11:34009248..34010191,2	K562	blood:
3	chr11:33667138..33667889-chr11:33850774..33851566,2	K562	blood:
4	chr11:33829464..33830463-chr11:33850763..33851644,6	MCF-7	breast:
5	chr11:33847500..33851586-chr11:33855644..33857929,3	MCF-7	breast:
6	chr11:33830934..33831625-chr11:33850765..33851369,2	K562	blood:
7	chr11:33737945..33740866-chr11:33849483..33851287,2	MCF-7	breast:
8	chr11:33827463..33830110-chr11:33848684..33852679,4	K562	blood:
9	chr11:33829495..33830904-chr11:33850724..33851895,13	K562	blood:

No data

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10836118	0.83[EUR][1000 genomes]
rs11032363	1.00[YRI][hapmap]
rs11032380	1.00[YRI][hapmap]
rs11032400	0.80[EUR][1000 genomes]
rs11032410	0.84[EUR][1000 genomes]
rs11032411	0.84[EUR][1000 genomes]
rs11032412	0.84[EUR][1000 genomes]
rs11032413	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032417	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12420267	0.91[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12797630	0.84[EUR][1000 genomes]
rs1402953	1.00[YRI][hapmap]
rs17761158	1.00[YRI][hapmap]
rs3181274	1.00[YRI][hapmap]
rs4755340	0.83[CEU][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes]
rs4756025	0.84[AMR][1000 genomes]
rs4756052	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4756053	0.84[EUR][1000 genomes]
rs66951942	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7944285	0.82[EUR][1000 genomes]
rs7944476	0.84[EUR][1000 genomes]
rs7944954	0.84[EUR][1000 genomes]
rs7948037	0.84[EUR][1000 genomes]
rs831611	1.00[YRI][hapmap]
rs831625	1.00[YRI][hapmap]
rs831635	1.00[YRI][hapmap]
rs939804	0.82[CEU][hapmap]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33850000-33851200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr11:33850200-33851200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
3	chr11:33850200-33851200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr11:33850200-33851200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:33850200-33851200	Bivalent/Poised TSS	Fetal Brain Female	brain
6	chr11:33850200-33851400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
7	chr11:33850200-33851400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
8	chr11:33850200-33851400	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
9	chr11:33850400-33851200	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
10	chr11:33850400-33851200	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:33850400-33851200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr11:33850400-33851200	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
13	chr11:33850400-33851200	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:33850400-33851200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
15	chr11:33850400-33851200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
16	chr11:33850400-33851200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
17	chr11:33850400-33851200	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr11:33850400-33851200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr11:33850400-33851200	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
20	chr11:33850400-33851200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:33850400-33851200	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
22	chr11:33850400-33851200	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
23	chr11:33850400-33851200	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
24	chr11:33850400-33851200	Bivalent Enhancer	Placenta	Placenta
25	chr11:33850400-33851200	Active TSS	Right Atrium	heart
26	chr11:33850400-33851200	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
27	chr11:33850400-33851400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
28	chr11:33850400-33851400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
29	chr11:33850400-33851400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
30	chr11:33850400-33851400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
31	chr11:33850400-33851400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
32	chr11:33850600-33851200	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr11:33850600-33851200	Bivalent/Poised TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr11:33850600-33851200	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:33850600-33851200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr11:33850600-33851200	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:33850600-33851200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
38	chr11:33850600-33851200	Flanking Bivalent TSS/Enh	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr11:33850600-33851200	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
40	chr11:33850600-33851200	Bivalent/Poised TSS	Aorta	Aorta
41	chr11:33850600-33851200	Flanking Bivalent TSS/Enh	Brain Inferior Temporal Lobe	brain
42	chr11:33850600-33851200	Bivalent/Poised TSS	Brain Substantia Nigra	brain
43	chr11:33850600-33851200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
44	chr11:33850600-33851200	Enhancers	Lung	lung
45	chr11:33850600-33851200	Flanking Active TSS	Ovary	ovary
46	chr11:33850600-33851200	Flanking Active TSS	Pancreas	Pancrea
47	chr11:33850600-33851200	Bivalent/Poised TSS	Psoas Muscle	Psoas
48	chr11:33850600-33851200	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
49	chr11:33850600-33851200	Flanking Bivalent TSS/Enh	Skeletal Muscle Female	skeletal muscle
50	chr11:33850600-33851200	Flanking Active TSS	HMEC	breast

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