Variant report

Variant	rs3181274
Chromosome Location	chr11:33755289-33755290
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:33744704..33746248-chr11:33754825..33757634,2	K562	blood:
2	chr11:33741862..33744483-chr11:33754300..33758090,5	K562	blood:
3	chr11:33719802..33725980-chr11:33755197..33760109,10	MCF-7	breast:
4	chr11:33740386..33747828-chr11:33750725..33760528,16	K562	blood:
5	chr11:33740434..33748761-chr11:33752749..33759182,20	MCF-7	breast:
6	chr11:33730241..33733771-chr11:33754827..33758431,3	K562	blood:
7	chr11:33735999..33748184-chr11:33752891..33760863,45	MCF-7	breast:
8	chr11:33750894..33752859-chr11:33753319..33757778,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000205177	Chromatin interaction
ENSG00000085063	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1047581	1.00[CHB][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs10836108	0.88[EUR][1000 genomes]
rs11032350	1.00[CHB][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs11032363	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032374	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11032380	1.00[YRI][hapmap];0.90[AMR][1000 genomes]
rs1112840	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12360810	0.95[ASN][1000 genomes]
rs12364970	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs12420267	1.00[YRI][hapmap]
rs1402953	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1464487	0.87[EUR][1000 genomes]
rs1522087	0.88[EUR][1000 genomes]
rs1546727	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs1578986	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs17761158	1.00[YRI][hapmap]
rs2901375	0.95[ASN][1000 genomes]
rs2901376	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs34944910	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35162575	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36093484	0.85[ASN][1000 genomes]
rs4755340	1.00[YRI][hapmap]
rs4755893	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs4755894	0.91[ASN][1000 genomes]
rs56113937	0.95[ASN][1000 genomes]
rs56399849	0.95[ASN][1000 genomes]
rs704702	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs704703	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs7117382	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7131663	0.89[ASN][1000 genomes]
rs7357	1.00[CHB][hapmap]
rs831594	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs831611	1.00[YRI][hapmap]
rs831625	1.00[YRI][hapmap]
rs831635	1.00[YRI][hapmap]
rs842	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs953871	0.91[CEU][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832113	chr11:33609202-33767781	Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33744000-33755400	Weak transcription	Brain Germinal Matrix	brain
2	chr11:33744000-33755800	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:33744000-33756400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr11:33744200-33755600	Weak transcription	Fetal Brain Female	brain
5	chr11:33744400-33756200	Weak transcription	Primary T cells from cord blood	blood
6	chr11:33744600-33755400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr11:33745400-33756200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:33746200-33756200	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr11:33746400-33755600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr11:33746600-33755400	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr11:33746600-33755600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr11:33746600-33755600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr11:33746600-33755800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr11:33746600-33756400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr11:33746600-33756400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:33746600-33756400	Weak transcription	Fetal Kidney	kidney
17	chr11:33746600-33756600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:33747000-33756000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr11:33747000-33756000	Weak transcription	Fetal Stomach	stomach
20	chr11:33747200-33755400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr11:33747200-33755600	Weak transcription	Brain Hippocampus Middle	brain
22	chr11:33747200-33755600	Weak transcription	Brain Substantia Nigra	brain
23	chr11:33750800-33757000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr11:33751200-33755600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr11:33751600-33755400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr11:33751600-33755400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr11:33752000-33757000	Transcr. at gene 5' and 3'	Muscle Satellite Cultured Cells	--
28	chr11:33752200-33755800	Weak transcription	Liver	Liver
29	chr11:33752400-33755400	Enhancers	Colon Smooth Muscle	Colon
30	chr11:33752400-33755600	Weak transcription	Ovary	ovary
31	chr11:33752400-33755800	Weak transcription	Fetal Brain Male	brain
32	chr11:33752600-33755600	Weak transcription	Fetal Lung	lung
33	chr11:33752800-33755600	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr11:33753000-33755400	Enhancers	Rectal Mucosa Donor 31	rectum
35	chr11:33753000-33755600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr11:33753000-33755800	Transcr. at gene 5' and 3'	Hela-S3	cervix
37	chr11:33753000-33756000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr11:33753000-33756000	Enhancers	Sigmoid Colon	Sigmoid Colon
39	chr11:33753000-33756400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
40	chr11:33753000-33757000	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr11:33753000-33757000	Transcr. at gene 5' and 3'	HMEC	breast
42	chr11:33753000-33757000	Transcr. at gene 5' and 3'	NHEK	skin
43	chr11:33753200-33755400	Weak transcription	Duodenum Mucosa	Duodenum
44	chr11:33753200-33755600	Weak transcription	Fetal Heart	heart
45	chr11:33753400-33755600	Enhancers	Colonic Mucosa	Colon
46	chr11:33753800-33755600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr11:33753800-33755600	Weak transcription	Brain Cingulate Gyrus	brain
48	chr11:33753800-33756000	Enhancers	HepG2	liver
49	chr11:33754000-33755600	Weak transcription	Aorta	Aorta
50	chr11:33754000-33758600	Active TSS	Right Ventricle	heart

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