Variant report

Variant	rs56399849
Chromosome Location	chr11:33736682-33736683
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:33730407..33733041-chr11:33734646..33737928,3	MCF-7	breast:
2	chr11:33735999..33748184-chr11:33752891..33760863,45	MCF-7	breast:
3	chr11:33729668..33731840-chr11:33735450..33737003,2	K562	blood:
4	chr11:33735021..33736999-chr11:33738619..33740125,2	K562	blood:
5	chr11:33724538..33726806-chr11:33736477..33738773,2	MCF-7	breast:
6	chr11:33728391..33731840-chr11:33734538..33737003,3	K562	blood:

Variant related genes	Relation type
ENSG00000085063	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1047581	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11032350	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11032363	0.95[ASN][1000 genomes]
rs11032374	0.93[ASN][1000 genomes]
rs1112840	0.93[ASN][1000 genomes]
rs12360810	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364970	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1402953	0.95[ASN][1000 genomes]
rs1546727	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2901375	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3181274	0.95[ASN][1000 genomes]
rs34944910	0.93[ASN][1000 genomes]
rs35162575	0.93[ASN][1000 genomes]
rs36093484	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4755893	0.89[ASN][1000 genomes]
rs4755894	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56113937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7117382	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7131663	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs842	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832113	chr11:33609202-33767781	Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33723000-33746000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:33723200-33737400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr11:33723200-33744400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr11:33723200-33744400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr11:33723400-33741400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr11:33723400-33745000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:33723400-33745800	Weak transcription	Primary B cells from peripheral blood	blood
8	chr11:33723400-33746000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr11:33723400-33753400	Weak transcription	Primary B cells from cord blood	blood
10	chr11:33726400-33739800	Strong transcription	Fetal Muscle Trunk	muscle
11	chr11:33726800-33741400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:33727000-33738200	Strong transcription	HSMM	muscle
13	chr11:33728200-33744000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr11:33728400-33744600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr11:33728600-33738200	Strong transcription	Rectal Mucosa Donor 29	rectum
16	chr11:33728600-33745000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr11:33729200-33737000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr11:33729200-33740000	Strong transcription	Fetal Muscle Leg	muscle
19	chr11:33729200-33742400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:33729200-33743200	Strong transcription	GM12878-XiMat	blood
21	chr11:33729800-33742400	Strong transcription	Osteobl	bone
22	chr11:33731000-33741400	Weak transcription	Fetal Brain Male	brain
23	chr11:33731200-33736800	Strong transcription	NHEK	skin
24	chr11:33731600-33737000	Strong transcription	Adipose Nuclei	Adipose
25	chr11:33731800-33737000	Weak transcription	Colonic Mucosa	Colon
26	chr11:33731800-33737400	Weak transcription	Brain Angular Gyrus	brain
27	chr11:33731800-33737400	Weak transcription	Fetal Brain Female	brain
28	chr11:33731800-33737600	Weak transcription	Brain Hippocampus Middle	brain
29	chr11:33731800-33738200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr11:33731800-33738200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr11:33731800-33738400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr11:33731800-33738400	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr11:33731800-33741200	Weak transcription	Ovary	ovary
34	chr11:33732000-33737000	Weak transcription	HepG2	liver
35	chr11:33732000-33737200	Weak transcription	Fetal Lung	lung
36	chr11:33732000-33737600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr11:33732000-33738000	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr11:33732000-33738000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr11:33732000-33738000	Weak transcription	Gastric	stomach
40	chr11:33732000-33738200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr11:33732000-33738600	Weak transcription	Spleen	Spleen
42	chr11:33732000-33743000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr11:33732000-33745800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr11:33732000-33746000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
45	chr11:33732200-33737000	Weak transcription	Primary T cells fromperipheralblood	blood
46	chr11:33732200-33737200	Weak transcription	Brain Substantia Nigra	brain
47	chr11:33732200-33737200	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr11:33732400-33737200	Strong transcription	HUVEC	blood vessel
49	chr11:33732800-33736800	Strong transcription	Hela-S3	cervix
50	chr11:33732800-33738000	Weak transcription	Primary T helper cells PMA-I stimulated	--

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