Variant report

Variant	rs7117382
Chromosome Location	chr11:33737733-33737734
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:33730407..33733041-chr11:33734646..33737928,3	MCF-7	breast:
2	chr11:33735999..33748184-chr11:33752891..33760863,45	MCF-7	breast:
3	chr11:33736797..33739107-chr11:33760655..33763290,2	MCF-7	breast:
4	chr11:33724538..33726806-chr11:33736477..33738773,2	MCF-7	breast:
5	chr11:33737491..33739534-chr11:33756221..33758785,4	MCF-7	breast:
6	chr11:33737137..33739086-chr11:33763615..33764690,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000085063	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1047581	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.88[JPT][hapmap];0.86[MEX][hapmap];0.88[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11032350	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.88[JPT][hapmap];0.88[TSI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11032363	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs11032374	0.93[ASN][1000 genomes]
rs1112840	0.93[ASN][1000 genomes]
rs12360810	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12364970	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1402953	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1546727	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.95[GIH][hapmap];0.88[TSI][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2901375	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3181274	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs34944910	0.93[ASN][1000 genomes]
rs35162575	0.93[ASN][1000 genomes]
rs36093484	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4755893	1.00[CHB][hapmap];0.87[CHD][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap];0.89[ASN][1000 genomes]
rs4755894	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56113937	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56399849	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7131663	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7357	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.88[TSI][hapmap]
rs842	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.88[TSI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832113	chr11:33609202-33767781	Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7117382	FSHB	cis	parietal	SCAN

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33723000-33746000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:33723200-33744400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr11:33723200-33744400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr11:33723400-33741400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr11:33723400-33745000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr11:33723400-33745800	Weak transcription	Primary B cells from peripheral blood	blood
7	chr11:33723400-33746000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr11:33723400-33753400	Weak transcription	Primary B cells from cord blood	blood
9	chr11:33726400-33739800	Strong transcription	Fetal Muscle Trunk	muscle
10	chr11:33726800-33741400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:33727000-33738200	Strong transcription	HSMM	muscle
12	chr11:33728200-33744000	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr11:33728400-33744600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr11:33728600-33738200	Strong transcription	Rectal Mucosa Donor 29	rectum
15	chr11:33728600-33745000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr11:33729200-33740000	Strong transcription	Fetal Muscle Leg	muscle
17	chr11:33729200-33742400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr11:33729200-33743200	Strong transcription	GM12878-XiMat	blood
19	chr11:33729800-33742400	Strong transcription	Osteobl	bone
20	chr11:33731000-33741400	Weak transcription	Fetal Brain Male	brain
21	chr11:33731800-33738200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:33731800-33738200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr11:33731800-33738400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:33731800-33738400	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr11:33731800-33741200	Weak transcription	Ovary	ovary
26	chr11:33732000-33738000	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr11:33732000-33738000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr11:33732000-33738000	Weak transcription	Gastric	stomach
29	chr11:33732000-33738200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr11:33732000-33738600	Weak transcription	Spleen	Spleen
31	chr11:33732000-33743000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr11:33732000-33745800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr11:33732000-33746000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr11:33732800-33738000	Weak transcription	Primary T helper cells PMA-I stimulated	--
35	chr11:33733200-33737800	Weak transcription	Fetal Stomach	stomach
36	chr11:33733400-33739000	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr11:33733400-33744200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr11:33733800-33744200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr11:33733800-33744600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr11:33734000-33742000	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr11:33734200-33741400	Weak transcription	Fetal Kidney	kidney
42	chr11:33734400-33738200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr11:33734800-33744800	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr11:33735000-33738000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr11:33735200-33738000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr11:33735200-33738200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr11:33735400-33743000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
48	chr11:33735600-33738400	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr11:33735600-33742800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr11:33735800-33737800	Weak transcription	Primary hematopoietic stem cells	blood

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