Variant report

Variant	rs11032374
Chromosome Location	chr11:33793951-33793952
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr11:33793853-33794167	MCF10A-Er-Src	breast:	n/a	n/a
2	MAZ	chr11:33793933-33794040	HepG2	liver:	n/a	n/a
3	JUND	chr11:33793857-33794130	HepG2	liver:	n/a	chr11:33794013-33794024
4	CTCF	chr11:33793940-33794090	HEEpiC	esophagus:	n/a	n/a
5	FOS	chr11:33793814-33794173	MCF10A-Er-Src	breast:	n/a	n/a
6	MYC	chr11:33793873-33794202	MCF10A-Er-Src	breast:	n/a	n/a
7	FOS	chr11:33793851-33794152	MCF10A-Er-Src	breast:	n/a	n/a
8	JUN	chr11:33793745-33794394	K562	blood:	n/a	n/a
9	FOS	chr11:33793848-33794164	MCF10A-Er-Src	breast:	n/a	n/a
10	POLR2A	chr11:33793936-33794027	ProgFib	skin:	n/a	n/a
11	FOSL1	chr11:33793805-33794109	K562	blood:	n/a	n/a
12	JUND	chr11:33793839-33794162	K562	blood:	n/a	chr11:33794013-33794024
13	MYC	chr11:33793895-33794156	MCF10A-Er-Src	breast:	n/a	n/a
14	ATF3	chr11:33793892-33794112	K562	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000254508	TF binding region
FBXO3	TF binding region
ENSG00000255272	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1047581	0.85[ASN][1000 genomes]
rs10836108	0.90[EUR][1000 genomes]
rs11032350	0.91[ASN][1000 genomes]
rs11032363	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11032380	0.93[AMR][1000 genomes]
rs1112840	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12360810	0.93[ASN][1000 genomes]
rs12364970	0.89[ASN][1000 genomes]
rs1402953	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1464487	0.90[EUR][1000 genomes]
rs1522087	0.89[EUR][1000 genomes]
rs1546727	0.89[ASN][1000 genomes]
rs1578986	0.89[EUR][1000 genomes]
rs2901375	0.93[ASN][1000 genomes]
rs2901376	0.89[EUR][1000 genomes]
rs3181274	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34944910	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35162575	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36093484	0.82[ASN][1000 genomes]
rs4755893	0.82[ASN][1000 genomes]
rs4755894	0.89[ASN][1000 genomes]
rs56113937	0.93[ASN][1000 genomes]
rs56399849	0.93[ASN][1000 genomes]
rs704702	0.87[EUR][1000 genomes]
rs704703	0.87[EUR][1000 genomes]
rs7117382	0.93[ASN][1000 genomes]
rs7131663	0.87[ASN][1000 genomes]
rs831594	0.87[EUR][1000 genomes]
rs842	0.82[ASN][1000 genomes]
rs953871	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523356	chr11:33777334-33797408	Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33758800-33795000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:33759000-33795200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:33769600-33795000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:33778800-33794600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr11:33779600-33795000	Weak transcription	Colonic Mucosa	Colon
6	chr11:33786600-33794000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr11:33787600-33794400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:33787600-33795000	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr11:33787800-33794000	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr11:33787800-33794200	Weak transcription	Fetal Intestine Small	intestine
11	chr11:33788000-33794000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:33788000-33794200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr11:33788000-33794800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr11:33788200-33794400	Weak transcription	Fetal Brain Male	brain
15	chr11:33788400-33794000	Weak transcription	Esophagus	oesophagus
16	chr11:33788400-33794000	Weak transcription	Gastric	stomach
17	chr11:33788600-33794000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr11:33788600-33794200	Weak transcription	Fetal Muscle Leg	muscle
19	chr11:33788800-33794800	Weak transcription	HSMMtube	muscle
20	chr11:33789200-33794400	Weak transcription	Fetal Stomach	stomach
21	chr11:33789400-33794000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr11:33789600-33794800	Weak transcription	HUVEC	blood vessel
23	chr11:33790200-33794200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr11:33790400-33794000	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr11:33790400-33794000	Weak transcription	Fetal Brain Female	brain
26	chr11:33790400-33794000	Weak transcription	Stomach Smooth Muscle	stomach
27	chr11:33790400-33794200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr11:33790400-33794800	Weak transcription	Primary hematopoietic stem cells	blood
29	chr11:33790400-33795000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr11:33790600-33794000	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr11:33790600-33794000	Weak transcription	Left Ventricle	heart
32	chr11:33790600-33794200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:33790600-33794200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr11:33790800-33795000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:33791200-33794400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:33791400-33794000	Weak transcription	Placenta	Placenta
37	chr11:33791400-33794000	Weak transcription	NHLF	lung
38	chr11:33791400-33794800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr11:33791400-33794800	Weak transcription	Osteobl	bone
40	chr11:33791600-33794000	Weak transcription	Duodenum Mucosa	Duodenum
41	chr11:33791800-33794000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr11:33792000-33794600	Weak transcription	NHDF-Ad	bronchial
43	chr11:33792000-33795000	Weak transcription	HSMM	muscle
44	chr11:33792200-33794000	Weak transcription	Primary monocytes fromperipheralblood	blood
45	chr11:33792200-33794000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr11:33792200-33794000	Weak transcription	Fetal Thymus	thymus
47	chr11:33792200-33794000	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr11:33792200-33794200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr11:33792200-33794200	Weak transcription	Fetal Intestine Large	intestine
50	chr11:33792200-33794400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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