Variant report

Variant	rs11032363
Chromosome Location	chr11:33765683-33765684
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:33756213..33759924-chr11:33763049..33766673,5	MCF-7	breast:
2	chr11:33763274..33765772-chr11:33766877..33769018,2	MCF-7	breast:
3	chr11:33756685..33760340-chr11:33762544..33766325,4	MCF-7	breast:
4	chr11:33763093..33766098-chr11:33769315..33772187,4	K562	blood:

Variant related genes	Relation type
ENSG00000110429	Chromatin interaction
ENSG00000085063	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs1047581	1.00[CHB][hapmap];0.93[CHD][hapmap];0.88[JPT][hapmap];0.87[ASN][1000 genomes]
rs10836108	0.88[EUR][1000 genomes]
rs11032350	1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[JPT][hapmap];0.93[ASN][1000 genomes]
rs11032374	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11032380	0.82[CEU][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes]
rs1112840	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12282096	0.82[CEU][hapmap]
rs12360810	0.95[ASN][1000 genomes]
rs12361553	0.82[CEU][hapmap]
rs12364970	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs12420267	1.00[YRI][hapmap]
rs1402953	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1464487	0.87[EUR][1000 genomes]
rs1522087	0.88[EUR][1000 genomes]
rs1546727	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[ASN][1000 genomes]
rs1578986	1.00[CEU][hapmap];0.89[TSI][hapmap];0.88[EUR][1000 genomes]
rs17761158	1.00[LWK][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs2056396	0.82[CEU][hapmap]
rs2901375	0.95[ASN][1000 genomes]
rs2901376	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs3181274	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34944910	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35162575	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs36093484	0.85[ASN][1000 genomes]
rs4755340	1.00[YRI][hapmap]
rs4755893	1.00[CHB][hapmap];0.93[CHD][hapmap];0.85[ASN][1000 genomes]
rs4755894	0.91[ASN][1000 genomes]
rs56113937	0.95[ASN][1000 genomes]
rs56399849	0.95[ASN][1000 genomes]
rs704702	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs704703	1.00[CEU][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes]
rs7117382	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7125621	0.82[CEU][hapmap]
rs7131663	0.89[ASN][1000 genomes]
rs7357	1.00[CHB][hapmap];0.93[CHD][hapmap]
rs7927218	0.82[CEU][hapmap]
rs7929150	1.00[ASW][hapmap]
rs831594	1.00[CEU][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes]
rs831596	0.84[CEU][hapmap];0.81[TSI][hapmap]
rs831611	1.00[YRI][hapmap]
rs831625	1.00[YRI][hapmap]
rs831635	1.00[YRI][hapmap]
rs842	1.00[CHB][hapmap];0.93[CHD][hapmap];0.85[ASN][1000 genomes]
rs939804	0.81[MKK][hapmap]
rs953871	0.96[CEU][hapmap];0.85[TSI][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832113	chr11:33609202-33767781	Transcr. at gene 5' and 3' Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs11032363	FSHB	cis	parietal	SCAN
rs11032363	APIP	cis	cerebellum	SCAN
rs11032363	CAPRIN1	cis	cerebellum	SCAN
rs11032363	DCDC1	cis	cerebellum	SCAN
rs11032363	FBXO3	cis	cerebellum	SCAN

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33758000-33770200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr11:33758200-33766400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr11:33758600-33765800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr11:33758600-33767800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr11:33758600-33770200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr11:33758800-33768000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr11:33758800-33768400	Weak transcription	Fetal Muscle Trunk	muscle
8	chr11:33758800-33770000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:33758800-33770800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr11:33758800-33771800	Weak transcription	Brain Angular Gyrus	brain
11	chr11:33758800-33774600	Weak transcription	Esophagus	oesophagus
12	chr11:33758800-33795000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr11:33759000-33767800	Weak transcription	Brain Hippocampus Middle	brain
14	chr11:33759000-33768200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr11:33759000-33769200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr11:33759000-33770200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr11:33759000-33771800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:33759000-33773400	Weak transcription	Lung	lung
19	chr11:33759000-33774600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr11:33759000-33778400	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr11:33759000-33780800	Weak transcription	Psoas Muscle	Psoas
22	chr11:33759000-33781000	Weak transcription	Fetal Brain Male	brain
23	chr11:33759000-33795200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr11:33759200-33770200	Weak transcription	GM12878-XiMat	blood
25	chr11:33759200-33771000	Weak transcription	Brain Anterior Caudate	brain
26	chr11:33759200-33771200	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr11:33759200-33774600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr11:33759400-33767800	Weak transcription	Brain Germinal Matrix	brain
29	chr11:33759400-33768200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr11:33759400-33770600	Weak transcription	NH-A	brain
31	chr11:33759400-33773400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr11:33759400-33778200	Weak transcription	Cortex derived primary cultured neurospheres	brain
33	chr11:33759600-33767800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr11:33759600-33768200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr11:33759600-33768400	Weak transcription	Fetal Kidney	kidney
36	chr11:33759600-33774600	Weak transcription	HSMMtube	muscle
37	chr11:33759800-33769400	Weak transcription	Osteobl	bone
38	chr11:33760000-33766000	Weak transcription	HepG2	liver
39	chr11:33760000-33767600	Weak transcription	HMEC	breast
40	chr11:33760000-33774400	Weak transcription	Muscle Satellite Cultured Cells	--
41	chr11:33760200-33774600	Weak transcription	Hela-S3	cervix
42	chr11:33760400-33769200	Weak transcription	NHLF	lung
43	chr11:33760400-33770600	Weak transcription	NHDF-Ad	bronchial
44	chr11:33760400-33774600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr11:33760400-33785200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr11:33760800-33767600	Weak transcription	K562	blood
47	chr11:33761800-33767400	Weak transcription	NHEK	skin
48	chr11:33763200-33792200	Strong transcription	Fetal Thymus	thymus
49	chr11:33763200-33792400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
50	chr11:33763800-33766000	Strong transcription	Fetal Intestine Large	intestine

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