Variant report

Variant	rs7125621
Chromosome Location	chr11:33806361-33806362
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:33793454..33797702-chr11:33802064..33806582,4	K562	blood:

Variant related genes	Relation type
ENSG00000110429	Chromatin interaction
ENSG00000254508	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11032363	0.82[CEU][hapmap]
rs11032380	1.00[CEU][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes]
rs12282096	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12361553	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12420267	0.87[CEU][hapmap]
rs1402953	0.82[CEU][hapmap]
rs1402957	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1464484	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1464487	0.83[AMR][1000 genomes]
rs1522087	0.82[AMR][1000 genomes]
rs1533800	1.00[YRI][hapmap]
rs1533801	0.81[ASW][hapmap];0.93[YRI][hapmap]
rs1578986	0.82[CEU][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes]
rs2056396	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2140066	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2177123	0.94[CHB][hapmap];0.86[CHD][hapmap];0.82[ASN][1000 genomes]
rs2222397	0.94[CHB][hapmap]
rs2421209	0.94[CHB][hapmap];0.96[CHD][hapmap];0.81[ASN][1000 genomes]
rs2901376	0.86[CEU][hapmap];0.82[AMR][1000 genomes]
rs4755340	0.95[CEU][hapmap]
rs4756025	1.00[CEU][hapmap]
rs4756031	0.94[CHB][hapmap];0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs704702	0.82[CEU][hapmap];0.82[AMR][1000 genomes]
rs704703	0.82[CEU][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes]
rs7927218	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs831594	0.82[CEU][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap];0.82[AMR][1000 genomes]
rs831596	0.82[MEX][hapmap]
rs939804	0.95[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.90[JPT][hapmap];0.84[TSI][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs953871	0.87[CEU][hapmap];0.84[GIH][hapmap];0.91[MEX][hapmap];0.84[TSI][hapmap];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975165	chr11:33806356-33809766	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7125621	FBXO3	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33802200-33818200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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