Variant report

Variant	rs1533801
Chromosome Location	chr11:33824173-33824174
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF7L2	chr11:33824173-33824573	HCT-116	colon:	n/a	n/a
2	SP1	chr11:33824081-33824865	HCT-116	colon:	n/a	n/a
3	E2F6	chr11:33823935-33824649	A549	lung:	n/a	n/a
4	TAF1	chr11:33824106-33824533	SK-N-SH	brain:	n/a	n/a
5	POLR2A	chr11:33823640-33824505	U87	brain:	n/a	n/a
6	EGR1	chr11:33824096-33824558	H1-hESC	embryonic stem cell:	n/a	n/a
7	SIN3AK20	chr11:33824035-33824508	H1-hESC	embryonic stem cell:	n/a	n/a
8	SIN3AK20	chr11:33824091-33824501	PFSK-1	brain:	n/a	n/a
9	BRCA1	chr11:33823948-33824608	H1-hESC	embryonic stem cell:	n/a	n/a
10	POLR2A	chr11:33824076-33824564	HCT-116	colon:	n/a	n/a
11	SIN3AK20	chr11:33824031-33824561	SK-N-SH	brain:	n/a	n/a
12	JUND	chr11:33824003-33824746	HCT-116	colon:	n/a	chr11:33824438-33824452 chr11:33824288-33824300 chr11:33824372-33824386
13	USF1	chr11:33823812-33824580	H1-hESC	embryonic stem cell:	n/a	n/a
14	SP1	chr11:33823737-33824608	H1-hESC	embryonic stem cell:	n/a	n/a
15	POLR2A	chr11:33824060-33824464	PFSK-1	brain:	n/a	n/a
16	CBX3	chr11:33823947-33824815	HCT-116	colon:	n/a	n/a
17	MAX	chr11:33824051-33824587	ECC-1	luminal epithelium:	n/a	n/a
18	ATF2	chr11:33824074-33824611	H1-hESC	embryonic stem cell:	n/a	n/a
19	PBX3	chr11:33823883-33824688	SK-N-SH	brain:	n/a	n/a
20	MAX	chr11:33823839-33824625	H1-hESC	embryonic stem cell:	n/a	n/a
21	TAF1	chr11:33824055-33824568	H1-hESC	embryonic stem cell:	n/a	n/a
22	JUND	chr11:33823991-33824730	SK-N-SH	brain:	n/a	chr11:33824438-33824452 chr11:33824288-33824300 chr11:33824372-33824386
23	POLR2A	chr11:33823605-33824592	U87	brain:	n/a	n/a
24	POLR2A	chr11:33824051-33824545	PANC-1	pancreas:	n/a	n/a
25	TAF1	chr11:33824149-33824525	H1-hESC	embryonic stem cell:	n/a	n/a
26	POLR2A	chr11:33824074-33824547	HCT-116	colon:	n/a	n/a
27	RAD21	chr11:33823929-33824652	H1-hESC	embryonic stem cell:	n/a	n/a
28	GABPA	chr11:33824097-33824575	H1-hESC	embryonic stem cell:	n/a	n/a
29	POLR2A	chr11:33824136-33824549	H1-hESC	embryonic stem cell:	n/a	n/a
30	CTBP2	chr11:33823844-33824558	H1-hESC	embryonic stem cell:	n/a	n/a
31	FOSL2	chr11:33824000-33824545	SK-N-SH	brain:	n/a	chr11:33824438-33824452 chr11:33824288-33824300 chr11:33824372-33824386
32	E2F6	chr11:33823784-33824718	H1-hESC	embryonic stem cell:	n/a	chr11:33823883-33823890 chr11:33823883-33823890 chr11:33823883-33823890
33	ATF2	chr11:33824135-33824662	H1-hESC	embryonic stem cell:	n/a	n/a
34	FOXP2	chr11:33824115-33824482	SK-N-MC	brain:	n/a	n/a
35	YY1	chr11:33824168-33824610	H1-hESC	embryonic stem cell:	n/a	chr11:33824509-33824520
36	JUND	chr11:33823960-33824745	MCF-7	breast:	n/a	chr11:33824438-33824452 chr11:33824288-33824300 chr11:33824372-33824386
37	POLR2A	chr11:33823562-33824598	U87	brain:	n/a	n/a
38	EP300	chr11:33823995-33824696	A549	lung:	n/a	n/a
39	RAD21	chr11:33823971-33824636	H1-hESC	embryonic stem cell:	n/a	n/a
40	HA-E2F1	chr11:33823604-33824675	MCF-7	breast:	n/a	chr11:33823883-33823890 chr11:33823883-33823890 chr11:33823883-33823890
41	SP1	chr11:33823749-33824798	A549	lung:	n/a	n/a
42	EP300	chr11:33824160-33824521	SK-N-SH_RA	brain:	n/a	n/a
43	POLR2A	chr11:33824160-33824366	A549	lung:	n/a	n/a
44	TCF12	chr11:33824072-33824571	ECC-1	luminal epithelium:	n/a	chr11:33824380-33824388
45	FOXA2	chr11:33824118-33824575	A549	lung:	n/a	n/a
46	RAD21	chr11:33824144-33824523	IMR90	lung:	n/a	n/a
47	EP300	chr11:33824032-33824666	A549	lung:	n/a	n/a
48	E2F4	chr11:33824092-33824528	MCF10A-Er-Src	breast:	n/a	n/a
49	POLR2A	chr11:33824090-33824542	H1-neurons	neurons:	n/a	n/a
50	CEBPB	chr11:33824105-33824728	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:33823964..33825741-chr11:33848946..33850618,2	K562	blood:

Variant related genes	Relation type
ENSG00000255169	TF binding region

Extended variants
information (count: 23 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1000677	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs11032379	0.81[ASN][1000 genomes]
rs11032382	0.81[ASN][1000 genomes]
rs12282096	0.81[ASW][hapmap];0.93[YRI][hapmap]
rs1533800	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17038	0.84[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.85[JPT][hapmap];0.85[MEX][hapmap];0.83[TSI][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1879755	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1915891	0.85[ASN][1000 genomes]
rs2056396	0.93[YRI][hapmap]
rs2140067	0.81[ASN][1000 genomes]
rs2177121	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2177122	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2421211	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4366460	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4447153	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.81[JPT][hapmap];0.90[MEX][hapmap];0.92[TSI][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4451703	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4451704	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4755341	0.81[ASN][1000 genomes]
rs4756033	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs6484672	1.00[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs7125621	0.81[ASW][hapmap];0.93[YRI][hapmap]
rs7927218	0.93[YRI][hapmap]
rs7950864	0.90[CHB][hapmap];0.81[JPT][hapmap]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs1533801	WT1	cis	parietal	SCAN
rs1533801	CD59	cis	Esophagus Muscularis	GTEx
rs1533801	CD59	Cis_1M	lymphoblastoid	RTeQTL
rs1533801	CD59	cis	Artery Tibial	GTEx
rs1533801	CD59	cis	cerebellum	SCAN

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33823200-33824200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
2	chr11:33823200-33824200	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
3	chr11:33823200-33824400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr11:33823200-33824400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
5	chr11:33823400-33824200	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:33823400-33824200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr11:33823400-33824200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr11:33823400-33824200	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
9	chr11:33823400-33824200	Flanking Bivalent TSS/Enh	Fetal Lung	lung
10	chr11:33823400-33824200	Bivalent Enhancer	Stomach Mucosa	stomach
11	chr11:33823400-33824400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
12	chr11:33823400-33824400	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
13	chr11:33823400-33824400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr11:33823400-33824400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:33823400-33824400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr11:33823400-33824400	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr11:33823400-33824400	Bivalent Enhancer	Placenta	Placenta
18	chr11:33823400-33824400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
19	chr11:33823600-33824200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:33823600-33824200	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:33823600-33824200	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
22	chr11:33823600-33824200	Flanking Active TSS	Brain Angular Gyrus	brain
23	chr11:33823600-33824200	Flanking Bivalent TSS/Enh	Brain Substantia Nigra	brain
24	chr11:33823600-33824200	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
25	chr11:33823600-33824200	Flanking Bivalent TSS/Enh	HUVEC	blood vessel
26	chr11:33823600-33824200	Flanking Active TSS	NH-A	brain
27	chr11:33823600-33824200	Flanking Active TSS	NHDF-Ad	bronchial
28	chr11:33823600-33824200	Flanking Bivalent TSS/Enh	NHEK	skin
29	chr11:33823600-33824400	Active TSS	H9 Cell Line	embryonic stem cell
30	chr11:33823600-33824400	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr11:33823600-33824400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
32	chr11:33823600-33824400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
33	chr11:33823600-33824400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
34	chr11:33823600-33824400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr11:33823600-33824400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
36	chr11:33823600-33824400	Bivalent/Poised TSS	Brain Anterior Caudate	brain
37	chr11:33823600-33824400	Active TSS	Brain Germinal Matrix	brain
38	chr11:33823600-33824400	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
39	chr11:33823800-33824200	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr11:33823800-33824200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr11:33823800-33824200	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr11:33823800-33824200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr11:33823800-33824200	Flanking Bivalent TSS/Enh	Aorta	Aorta
44	chr11:33823800-33824200	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
45	chr11:33823800-33824200	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
46	chr11:33823800-33824200	Bivalent Enhancer	Esophagus	oesophagus
47	chr11:33823800-33824200	Flanking Bivalent TSS/Enh	Fetal Kidney	kidney
48	chr11:33823800-33824200	Flanking Active TSS	Gastric	stomach
49	chr11:33823800-33824200	Enhancers	Pancreas	Pancrea
50	chr11:33823800-33824200	Bivalent Enhancer	Rectal Mucosa Donor 31	rectum

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