Variant report

Variant	rs7950864
Chromosome Location	chr11:33830115-33830116
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr11:33829802-33830173	HepG2	liver:	n/a	chr11:33829963-33829973 chr11:33829961-33829974 chr11:33829958-33829977 chr11:33829963-33829975
2	SMC3	chr11:33829791-33830142	HepG2	liver:	n/a	chr11:33829959-33829973 chr11:33829959-33829967 chr11:33829963-33829973
3	CTCF	chr11:33829550-33830393	HCT-116	colon:	n/a	chr11:33829962-33829972 chr11:33829958-33829974 chr11:33829959-33829980 chr11:33829960-33829969 chr11:33829960-33829973 chr11:33829957-33829975
4	CTCF	chr11:33829750-33830191	H1-hESC	embryonic stem cell:	n/a	chr11:33829962-33829972 chr11:33829958-33829974 chr11:33829959-33829980 chr11:33829960-33829969 chr11:33829960-33829973 chr11:33829957-33829975
5	RAD21	chr11:33829758-33830174	SK-N-SH_RA	brain:	n/a	chr11:33829963-33829973 chr11:33829961-33829974 chr11:33829958-33829977 chr11:33829963-33829975
6	CTCF	chr11:33829810-33830123	Gliobla	brain:	n/a	chr11:33829962-33829972 chr11:33829958-33829974 chr11:33829959-33829980 chr11:33829960-33829969 chr11:33829960-33829973 chr11:33829957-33829975
7	RAD21	chr11:33829837-33830149	GM12878	blood:	n/a	chr11:33829963-33829973 chr11:33829961-33829974 chr11:33829958-33829977 chr11:33829963-33829975
8	RAD21	chr11:33829795-33830162	A549	lung:	n/a	chr11:33829963-33829973 chr11:33829961-33829974 chr11:33829958-33829977 chr11:33829963-33829975
9	CTCF	chr11:33829738-33830147	HepG2	liver:	n/a	chr11:33829962-33829972 chr11:33829958-33829974 chr11:33829959-33829980 chr11:33829960-33829969 chr11:33829960-33829973 chr11:33829957-33829975
10	MAFK	chr11:33829887-33830188	HepG2	liver:	n/a	n/a
11	RAD21	chr11:33829780-33830217	MCF-7	breast:	n/a	chr11:33829963-33829973 chr11:33829961-33829974 chr11:33829958-33829977 chr11:33829963-33829975
12	MAFK	chr11:33829880-33830136	HepG2	liver:	n/a	n/a
13	CTCF	chr11:33829805-33830117	Fibrobl	skin:	n/a	chr11:33829962-33829972 chr11:33829958-33829974 chr11:33829959-33829980 chr11:33829960-33829969 chr11:33829960-33829973 chr11:33829957-33829975
14	MAFK	chr11:33829811-33830170	Hela-S3	cervix:	n/a	n/a
15	SMC3	chr11:33829680-33830592	SK-N-SH	brain:	n/a	chr11:33829959-33829973 chr11:33829959-33829967 chr11:33829963-33829973
16	ELF1	chr11:33829758-33830218	MCF-7	breast:	n/a	n/a
17	RAD21	chr11:33829788-33830117	SK-N-SH_RA	brain:	n/a	chr11:33829963-33829973 chr11:33829961-33829974 chr11:33829958-33829977 chr11:33829963-33829975
18	JUND	chr11:33829787-33830369	H1-hESC	embryonic stem cell:	n/a	chr11:33829973-33829980
19	CTCF	chr11:33829766-33830179	IMR90	lung:	n/a	chr11:33829962-33829972 chr11:33829958-33829974 chr11:33829959-33829980 chr11:33829960-33829969 chr11:33829960-33829973 chr11:33829957-33829975
20	RAD21	chr11:33829617-33830233	HCT-116	colon:	n/a	chr11:33829963-33829973 chr11:33829961-33829974 chr11:33829958-33829977 chr11:33829963-33829975
21	RAD21	chr11:33829831-33830170	K562	blood:	n/a	chr11:33829963-33829973 chr11:33829961-33829974 chr11:33829958-33829977 chr11:33829963-33829975
22	MAFK	chr11:33829838-33830309	IMR90	lung:	n/a	n/a
23	CTCF	chr11:33829721-33830178	K562	blood:	n/a	chr11:33829962-33829972 chr11:33829958-33829974 chr11:33829959-33829980 chr11:33829960-33829969 chr11:33829960-33829973 chr11:33829957-33829975
24	RAD21	chr11:33829774-33830150	IMR90	lung:	n/a	chr11:33829963-33829973 chr11:33829961-33829974 chr11:33829958-33829977 chr11:33829963-33829975
25	CTCF	chr11:33829803-33830116	GM12878	blood:	n/a	chr11:33829962-33829972 chr11:33829958-33829974 chr11:33829959-33829980 chr11:33829960-33829969 chr11:33829960-33829973 chr11:33829957-33829975
26	SMC3	chr11:33829768-33830204	Hela-S3	cervix:	n/a	chr11:33829959-33829973 chr11:33829959-33829967 chr11:33829963-33829973
27	BACH1	chr11:33829823-33830189	H1-hESC	embryonic stem cell:	n/a	n/a
28	RAD21	chr11:33829672-33830238	H1-hESC	embryonic stem cell:	n/a	chr11:33829963-33829973 chr11:33829961-33829974 chr11:33829958-33829977 chr11:33829963-33829975
29	RAD21	chr11:33829661-33830268	A549	lung:	n/a	chr11:33829963-33829973 chr11:33829961-33829974 chr11:33829958-33829977 chr11:33829963-33829975
30	RAD21	chr11:33829606-33830418	SK-N-SH	brain:	n/a	chr11:33829963-33829973 chr11:33829961-33829974 chr11:33829958-33829977 chr11:33829963-33829975
31	FOXP2	chr11:33829787-33830116	SK-N-MC	brain:	n/a	n/a
32	CTCF	chr11:33829756-33830167	GM12878	blood:	n/a	chr11:33829962-33829972 chr11:33829958-33829974 chr11:33829959-33829980 chr11:33829960-33829969 chr11:33829960-33829973 chr11:33829957-33829975
33	YY1	chr11:33829833-33830157	H1-hESC	embryonic stem cell:	n/a	n/a
34	CTCF	chr11:33829810-33830131	A549	lung:	n/a	chr11:33829962-33829972 chr11:33829958-33829974 chr11:33829959-33829980 chr11:33829960-33829969 chr11:33829960-33829973 chr11:33829957-33829975
35	CTCF	chr11:33829817-33830136	GM19240	blood:	n/a	chr11:33829962-33829972 chr11:33829958-33829974 chr11:33829959-33829980 chr11:33829960-33829969 chr11:33829960-33829973 chr11:33829957-33829975
36	CTCF	chr11:33829711-33830213	A549	lung:	n/a	chr11:33829962-33829972 chr11:33829958-33829974 chr11:33829959-33829980 chr11:33829960-33829969 chr11:33829960-33829973 chr11:33829957-33829975
37	GTF2F1	chr11:33829818-33830161	H1-hESC	embryonic stem cell:	n/a	n/a
38	RAD21	chr11:33829689-33830317	MCF-7	breast:	n/a	chr11:33829963-33829973 chr11:33829961-33829974 chr11:33829958-33829977 chr11:33829963-33829975
39	BRCA1	chr11:33830066-33830142	GM12878	blood:	n/a	n/a
40	FOXM1	chr11:33829712-33830255	GM12878	blood:	n/a	n/a
41	CTCF	chr11:33829787-33830152	A549	lung:	n/a	chr11:33829962-33829972 chr11:33829958-33829974 chr11:33829959-33829980 chr11:33829960-33829969 chr11:33829960-33829973 chr11:33829957-33829975
42	CTCF	chr11:33829777-33830135	H1-hESC	embryonic stem cell:	n/a	chr11:33829962-33829972 chr11:33829958-33829974 chr11:33829959-33829980 chr11:33829960-33829969 chr11:33829960-33829973 chr11:33829957-33829975
43	RAD21	chr11:33829685-33830254	A549	lung:	n/a	chr11:33829963-33829973 chr11:33829961-33829974 chr11:33829958-33829977 chr11:33829963-33829975
44	CTCF	chr11:33829701-33830144	MCF-7	breast:	n/a	chr11:33829962-33829972 chr11:33829958-33829974 chr11:33829959-33829980 chr11:33829960-33829969 chr11:33829960-33829973 chr11:33829957-33829975
45	RAD21	chr11:33829773-33830122	HepG2	liver:	n/a	chr11:33829963-33829973 chr11:33829961-33829974 chr11:33829958-33829977 chr11:33829963-33829975
46	MAFF	chr11:33829876-33830185	HepG2	liver:	n/a	chr11:33830037-33830055
47	ZNF143	chr11:33829777-33830160	GM12878	blood:	n/a	n/a
48	IRF1	chr11:33829842-33830173	K562	blood:	n/a	chr11:33829865-33829879 chr11:33829855-33829864 chr11:33829863-33829877 chr11:33829869-33829879 chr11:33829859-33829873
49	RAD21	chr11:33829795-33830212	ECC-1	luminal epithelium:	n/a	chr11:33829963-33829973 chr11:33829961-33829974 chr11:33829958-33829977 chr11:33829963-33829975
50	CTCF	chr11:33829823-33830132	GM12892	blood:	n/a	chr11:33829962-33829972 chr11:33829958-33829974 chr11:33829959-33829980 chr11:33829960-33829969 chr11:33829960-33829973 chr11:33829957-33829975

No.	Distal block	Cell Line	Cell type
1	chr11:33828509..33830233-chr11:34379250..34381956,2	MCF-7	breast:
2	chr11:33829510..33830420-chr11:33849451..33850247,2	K562	blood:
3	chr11:33829495..33830904-chr11:33850724..33851895,13	K562	blood:
4	chr11:33824257..33826244-chr11:33828062..33830421,2	K562	blood:
5	chr11:33829491..33830362-chr11:33850833..33851690,3	MCF-7	breast:
6	chr11:33829487..33830424-chr11:33992296..33993010,3	K562	blood:
7	chr11:33829464..33830463-chr11:33850763..33851644,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254619	TF binding region
ENSG00000166016	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1000677	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10836113	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10836114	0.85[AMR][1000 genomes]
rs11032376	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11032379	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11032382	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11032396	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12576094	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1464485	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1533800	0.90[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs1533801	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs17038	0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs1879755	0.88[ASN][1000 genomes]
rs1915891	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2140067	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2177121	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2177122	0.90[CHB][hapmap];0.82[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2272067	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2421211	0.86[ASN][1000 genomes]
rs4366460	0.86[ASN][1000 genomes]
rs4447153	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4451703	0.89[ASN][1000 genomes]
rs4451704	0.89[ASN][1000 genomes]
rs4755341	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4756033	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57800019	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6484672	0.90[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72638193	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs869904	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33829000-33830200	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr11:33829800-33830200	Enhancers	Osteobl	bone
3	chr11:33830000-33830200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
4	chr11:33830000-33830200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
5	chr11:33830000-33830200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
6	chr11:33830000-33830200	Enhancers	Fetal Brain Male	brain
7	chr11:33830000-33830200	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
8	chr11:33830000-33830400	Enhancers	HUES6 Cell Line	embryonic stem cell

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