Variant report
| Variant | rs1879755 |
|---|---|
| Chromosome Location | chr11:33828706-33828707 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:33828509..33830233-chr11:34379250..34381956,2 | MCF-7 | breast: | |
| 2 | chr11:33827983..33829777-chr11:33833122..33835279,2 | K562 | blood: | |
| 3 | chr11:33824257..33826244-chr11:33828062..33830421,2 | K562 | blood: | |
| 4 | chr11:33827463..33830110-chr11:33848684..33852679,4 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000254619 | TF binding region |
| ENSG00000166016 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs1000677 | 0.84[ASN][1000 genomes] |
| rs10836113 | 0.90[ASN][1000 genomes] |
| rs11032379 | 0.81[ASN][1000 genomes] |
| rs11032382 | 0.81[ASN][1000 genomes] |
| rs11032396 | 0.90[ASN][1000 genomes] |
| rs1533800 | 0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs1533801 | 0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs17038 | 0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs1915891 | 0.85[ASN][1000 genomes] |
| rs2140067 | 0.81[ASN][1000 genomes] |
| rs2177121 | 0.81[ASN][1000 genomes] |
| rs2177122 | 0.81[ASN][1000 genomes] |
| rs2421211 | 0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4366460 | 0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs4447153 | 0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4451703 | 0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4451704 | 0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs4755341 | 0.88[ASN][1000 genomes] |
| rs4756033 | 0.82[AFR][1000 genomes];0.90[ASN][1000 genomes] |
| rs6484672 | 0.87[ASN][1000 genomes] |
| rs7950864 | 0.88[ASN][1000 genomes] |
mRNA abundance (count:3)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs1879755 | CD59 | cis | Esophagus Muscularis | GTEx |
| rs1879755 | CD59 | cis | Artery Tibial | GTEx |
| rs1879755 | CD59 | Cis_1M | lymphoblastoid | RTeQTL |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:33824600-33830000 | Weak transcription | Fetal Brain Male | brain |
