Variant report

Variant	rs1000677
Chromosome Location	chr11:33814061-33814062
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10836113	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10836114	0.83[AMR][1000 genomes]
rs11032376	1.00[CEU][hapmap];0.94[GIH][hapmap];0.88[TSI][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11032379	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11032382	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11032396	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12576094	1.00[CEU][hapmap];0.94[GIH][hapmap];0.86[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1464485	1.00[CEU][hapmap];0.94[GIH][hapmap];0.94[TSI][hapmap];0.95[EUR][1000 genomes]
rs1533800	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1533801	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.84[ASN][1000 genomes]
rs17038	0.95[CHB][hapmap];0.93[CHD][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs1879755	0.84[ASN][1000 genomes]
rs1915891	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2140067	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2177121	0.81[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2177122	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2272067	1.00[CEU][hapmap];0.94[GIH][hapmap];0.94[TSI][hapmap];0.95[EUR][1000 genomes]
rs2421211	0.93[ASN][1000 genomes]
rs4366460	0.93[ASN][1000 genomes]
rs4447153	0.91[CHB][hapmap];0.91[CHD][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs4451703	0.85[ASN][1000 genomes]
rs4451704	0.85[ASN][1000 genomes]
rs4755341	0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4756033	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57800019	0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6484666	0.88[CEU][hapmap]
rs6484672	1.00[CHB][hapmap];0.85[JPT][hapmap];0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72638193	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7950864	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs869904	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33802200-33818200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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