Variant report

Variant	rs869904
Chromosome Location	chr11:33824593-33824594
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SP1	chr11:33824081-33824865	HCT-116	colon:	n/a	n/a
2	E2F6	chr11:33823935-33824649	A549	lung:	n/a	n/a
3	BRCA1	chr11:33823948-33824608	H1-hESC	embryonic stem cell:	n/a	n/a
4	JUND	chr11:33824003-33824746	HCT-116	colon:	n/a	chr11:33824438-33824452 chr11:33824288-33824300 chr11:33824372-33824386
5	SP1	chr11:33823737-33824608	H1-hESC	embryonic stem cell:	n/a	n/a
6	CBX3	chr11:33823947-33824815	HCT-116	colon:	n/a	n/a
7	ATF2	chr11:33824074-33824611	H1-hESC	embryonic stem cell:	n/a	n/a
8	PBX3	chr11:33823883-33824688	SK-N-SH	brain:	n/a	n/a
9	MYC	chr11:33824263-33824610	MCF10A-Er-Src	breast:	n/a	n/a
10	TEAD4	chr11:33824183-33824618	H1-hESC	embryonic stem cell:	n/a	n/a
11	MAX	chr11:33823839-33824625	H1-hESC	embryonic stem cell:	n/a	n/a
12	JUND	chr11:33823991-33824730	SK-N-SH	brain:	n/a	chr11:33824438-33824452 chr11:33824288-33824300 chr11:33824372-33824386
13	CEBPB	chr11:33824240-33824610	A549	lung:	n/a	n/a
14	RAD21	chr11:33824192-33824593	SK-N-SH_RA	brain:	n/a	n/a
15	RAD21	chr11:33823929-33824652	H1-hESC	embryonic stem cell:	n/a	n/a
16	E2F6	chr11:33823784-33824718	H1-hESC	embryonic stem cell:	n/a	chr11:33823883-33823890 chr11:33823883-33823890 chr11:33823883-33823890
17	ATF2	chr11:33824135-33824662	H1-hESC	embryonic stem cell:	n/a	n/a
18	YY1	chr11:33824168-33824610	H1-hESC	embryonic stem cell:	n/a	chr11:33824509-33824520
19	JUND	chr11:33823960-33824745	MCF-7	breast:	n/a	chr11:33824438-33824452 chr11:33824288-33824300 chr11:33824372-33824386
20	POLR2A	chr11:33823562-33824598	U87	brain:	n/a	n/a
21	RFX5	chr11:33824225-33824622	H1-hESC	embryonic stem cell:	n/a	n/a
22	EP300	chr11:33823995-33824696	A549	lung:	n/a	n/a
23	RAD21	chr11:33823971-33824636	H1-hESC	embryonic stem cell:	n/a	n/a
24	HA-E2F1	chr11:33823604-33824675	MCF-7	breast:	n/a	chr11:33823883-33823890 chr11:33823883-33823890 chr11:33823883-33823890
25	SP1	chr11:33823749-33824798	A549	lung:	n/a	n/a
26	EP300	chr11:33824032-33824666	A549	lung:	n/a	n/a
27	CEBPB	chr11:33824105-33824728	A549	lung:	n/a	n/a
28	MAX	chr11:33824066-33824635	H1-hESC	embryonic stem cell:	n/a	n/a
29	JUND	chr11:33823983-33824780	HCT-116	colon:	n/a	chr11:33824438-33824452 chr11:33824288-33824300 chr11:33824372-33824386
30	MAFK	chr11:33824109-33824640	H1-hESC	embryonic stem cell:	n/a	chr11:33824288-33824298
31	MAZ	chr11:33823979-33824693	IMR90	lung:	n/a	n/a
32	JUND	chr11:33824076-33824724	A549	lung:	n/a	chr11:33824438-33824452 chr11:33824288-33824300 chr11:33824372-33824386
33	REST	chr11:33823783-33824692	H1-neurons	neurons:	n/a	chr11:33823790-33823798
34	KAP1	chr11:33823510-33824629	U2OS	brain:	n/a	chr11:33824240-33824248
35	MAX	chr11:33824012-33824605	SK-N-SH	brain:	n/a	n/a
36	JUND	chr11:33824074-33824649	T-47D	breast:	n/a	chr11:33824438-33824452 chr11:33824288-33824300 chr11:33824372-33824386
37	CEBPB	chr11:33824148-33824653	MCF-7	breast:	n/a	n/a
38	EP300	chr11:33824103-33824605	H1-hESC	embryonic stem cell:	n/a	n/a
39	RAD21	chr11:33824173-33824606	H1-hESC	embryonic stem cell:	n/a	n/a
40	YY1	chr11:33824133-33824631	SK-N-SH_RA	brain:	n/a	chr11:33824509-33824520
41	RAD21	chr11:33824094-33824627	SK-N-SH_RA	brain:	n/a	n/a
42	CTCF	chr11:33824480-33824630	SK-N-SH_RA	brain:	n/a	n/a
43	SP1	chr11:33823932-33824818	HCT-116	colon:	n/a	n/a
44	CEBPB	chr11:33824192-33824645	A549	lung:	n/a	n/a
45	SP1	chr11:33824082-33824666	H1-hESC	embryonic stem cell:	n/a	n/a
46	SIN3A	chr11:33823609-33824664	H1-hESC	embryonic stem cell:	n/a	chr11:33823791-33823799
47	JUND	chr11:33824052-33824666	MCF-7	breast:	n/a	chr11:33824438-33824452 chr11:33824288-33824300 chr11:33824372-33824386
48	JUND	chr11:33824041-33824743	SK-N-SH	brain:	n/a	chr11:33824438-33824452 chr11:33824288-33824300 chr11:33824372-33824386
49	TEAD4	chr11:33823835-33824644	H1-hESC	embryonic stem cell:	n/a	n/a
50	SP1	chr11:33823895-33824787	A549	lung:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:33824257..33826244-chr11:33828062..33830421,2	K562	blood:
2	chr11:33823964..33825741-chr11:33848946..33850618,2	K562	blood:

Variant related genes	Relation type
ENSG00000255169	TF binding region

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1000677	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10836113	0.94[EUR][1000 genomes]
rs11032376	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11032379	0.92[EUR][1000 genomes]
rs11032382	0.92[EUR][1000 genomes]
rs11032396	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12576094	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1464485	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17038	0.80[JPT][hapmap]
rs1915891	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2140067	0.92[EUR][1000 genomes]
rs2177121	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2177122	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2272067	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4756033	0.94[EUR][1000 genomes]
rs57800019	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6484666	0.88[CEU][hapmap]
rs6484672	0.83[AMR][1000 genomes]
rs72638193	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73489388	0.82[AMR][1000 genomes]
rs7950864	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33823800-33824600	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
2	chr11:33824000-33824600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr11:33824000-33824600	Bivalent Enhancer	Fetal Thymus	thymus
4	chr11:33824200-33824600	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr11:33824200-33824600	Enhancers	Fetal Heart	heart
6	chr11:33824200-33824600	Enhancers	Right Ventricle	heart
7	chr11:33824400-33824600	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:33824400-33824600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr11:33824400-33824600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr11:33824400-33824600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:33824400-33824600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:33824400-33824600	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr11:33824400-33824600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr11:33824400-33824600	Bivalent Enhancer	Colonic Mucosa	Colon
15	chr11:33824400-33824600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
16	chr11:33824400-33824600	Enhancers	Fetal Brain Male	brain
17	chr11:33824400-33824600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
18	chr11:33824400-33824600	Bivalent Enhancer	Fetal Muscle Leg	muscle
19	chr11:33824400-33824600	Bivalent Enhancer	Fetal Stomach	stomach
20	chr11:33824400-33824600	Bivalent Enhancer	Psoas Muscle	Psoas
21	chr11:33824400-33824600	Flanking Active TSS	A549	lung
22	chr11:33824400-33824600	Enhancers	HMEC	breast
23	chr11:33824400-33824800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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