Variant report

Variant	rs4756033
Chromosome Location	chr11:33829841-33829842
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr11:33829820-33829970	GM12801	blood:	n/a	chr11:33829960-33829969
2	RAD21	chr11:33829802-33830173	HepG2	liver:	n/a	chr11:33829963-33829973 chr11:33829961-33829974 chr11:33829958-33829977 chr11:33829963-33829975
3	SMC3	chr11:33829791-33830142	HepG2	liver:	n/a	chr11:33829959-33829973 chr11:33829959-33829967 chr11:33829963-33829973
4	CTCF	chr11:33829550-33830393	HCT-116	colon:	n/a	chr11:33829962-33829972 chr11:33829958-33829974 chr11:33829959-33829980 chr11:33829960-33829969 chr11:33829960-33829973 chr11:33829957-33829975
5	CTCF	chr11:33829750-33830191	H1-hESC	embryonic stem cell:	n/a	chr11:33829962-33829972 chr11:33829958-33829974 chr11:33829959-33829980 chr11:33829960-33829969 chr11:33829960-33829973 chr11:33829957-33829975
6	RAD21	chr11:33829758-33830174	SK-N-SH_RA	brain:	n/a	chr11:33829963-33829973 chr11:33829961-33829974 chr11:33829958-33829977 chr11:33829963-33829975
7	CTCF	chr11:33829810-33830123	Gliobla	brain:	n/a	chr11:33829962-33829972 chr11:33829958-33829974 chr11:33829959-33829980 chr11:33829960-33829969 chr11:33829960-33829973 chr11:33829957-33829975
8	RAD21	chr11:33829837-33830149	GM12878	blood:	n/a	chr11:33829963-33829973 chr11:33829961-33829974 chr11:33829958-33829977 chr11:33829963-33829975
9	RAD21	chr11:33829795-33830162	A549	lung:	n/a	chr11:33829963-33829973 chr11:33829961-33829974 chr11:33829958-33829977 chr11:33829963-33829975
10	MAZ	chr11:33829832-33830108	Hela-S3	cervix:	n/a	n/a
11	CTCF	chr11:33829738-33830147	HepG2	liver:	n/a	chr11:33829962-33829972 chr11:33829958-33829974 chr11:33829959-33829980 chr11:33829960-33829969 chr11:33829960-33829973 chr11:33829957-33829975
12	RAD21	chr11:33829780-33830217	MCF-7	breast:	n/a	chr11:33829963-33829973 chr11:33829961-33829974 chr11:33829958-33829977 chr11:33829963-33829975
13	YY1	chr11:33829762-33830110	GM12878	blood:	n/a	n/a
14	CTCF	chr11:33829805-33830117	Fibrobl	skin:	n/a	chr11:33829962-33829972 chr11:33829958-33829974 chr11:33829959-33829980 chr11:33829960-33829969 chr11:33829960-33829973 chr11:33829957-33829975
15	MAFK	chr11:33829811-33830170	Hela-S3	cervix:	n/a	n/a
16	SMC3	chr11:33829680-33830592	SK-N-SH	brain:	n/a	chr11:33829959-33829973 chr11:33829959-33829967 chr11:33829963-33829973
17	ELF1	chr11:33829758-33830218	MCF-7	breast:	n/a	n/a
18	RAD21	chr11:33829788-33830117	SK-N-SH_RA	brain:	n/a	chr11:33829963-33829973 chr11:33829961-33829974 chr11:33829958-33829977 chr11:33829963-33829975
19	CTCF	chr11:33829818-33830096	GM13977	blood:	n/a	chr11:33829962-33829972 chr11:33829958-33829974 chr11:33829959-33829980 chr11:33829960-33829969 chr11:33829960-33829973 chr11:33829957-33829975
20	JUND	chr11:33829787-33830369	H1-hESC	embryonic stem cell:	n/a	chr11:33829973-33829980
21	CTCF	chr11:33829840-33829990	HAc	cerebellar:	n/a	chr11:33829962-33829972 chr11:33829958-33829974 chr11:33829959-33829980 chr11:33829960-33829969 chr11:33829960-33829973 chr11:33829957-33829975
22	CTCF	chr11:33829766-33830179	IMR90	lung:	n/a	chr11:33829962-33829972 chr11:33829958-33829974 chr11:33829959-33829980 chr11:33829960-33829969 chr11:33829960-33829973 chr11:33829957-33829975
23	CTCF	chr11:33829835-33830101	GM19239	blood:	n/a	chr11:33829962-33829972 chr11:33829958-33829974 chr11:33829959-33829980 chr11:33829960-33829969 chr11:33829960-33829973 chr11:33829957-33829975
24	RAD21	chr11:33829617-33830233	HCT-116	colon:	n/a	chr11:33829963-33829973 chr11:33829961-33829974 chr11:33829958-33829977 chr11:33829963-33829975
25	CTCF	chr11:33829814-33830114	MCF-7	breast:	n/a	chr11:33829962-33829972 chr11:33829958-33829974 chr11:33829959-33829980 chr11:33829960-33829969 chr11:33829960-33829973 chr11:33829957-33829975
26	RAD21	chr11:33829831-33830170	K562	blood:	n/a	chr11:33829963-33829973 chr11:33829961-33829974 chr11:33829958-33829977 chr11:33829963-33829975
27	CTCF	chr11:33829830-33830059	GM20000	blood:	n/a	chr11:33829962-33829972 chr11:33829958-33829974 chr11:33829959-33829980 chr11:33829960-33829969 chr11:33829960-33829973 chr11:33829957-33829975
28	MAFK	chr11:33829838-33830309	IMR90	lung:	n/a	n/a
29	CTCF	chr11:33829721-33830178	K562	blood:	n/a	chr11:33829962-33829972 chr11:33829958-33829974 chr11:33829959-33829980 chr11:33829960-33829969 chr11:33829960-33829973 chr11:33829957-33829975
30	RAD21	chr11:33829774-33830150	IMR90	lung:	n/a	chr11:33829963-33829973 chr11:33829961-33829974 chr11:33829958-33829977 chr11:33829963-33829975
31	CTCF	chr11:33829803-33830116	GM12878	blood:	n/a	chr11:33829962-33829972 chr11:33829958-33829974 chr11:33829959-33829980 chr11:33829960-33829969 chr11:33829960-33829973 chr11:33829957-33829975
32	CTCF	chr11:33829829-33830094	MCF-7	breast:	n/a	chr11:33829962-33829972 chr11:33829958-33829974 chr11:33829959-33829980 chr11:33829960-33829969 chr11:33829960-33829973 chr11:33829957-33829975
33	SMC3	chr11:33829768-33830204	Hela-S3	cervix:	n/a	chr11:33829959-33829973 chr11:33829959-33829967 chr11:33829963-33829973
34	BACH1	chr11:33829823-33830189	H1-hESC	embryonic stem cell:	n/a	n/a
35	RAD21	chr11:33829672-33830238	H1-hESC	embryonic stem cell:	n/a	chr11:33829963-33829973 chr11:33829961-33829974 chr11:33829958-33829977 chr11:33829963-33829975
36	RAD21	chr11:33829661-33830268	A549	lung:	n/a	chr11:33829963-33829973 chr11:33829961-33829974 chr11:33829958-33829977 chr11:33829963-33829975
37	RAD21	chr11:33829606-33830418	SK-N-SH	brain:	n/a	chr11:33829963-33829973 chr11:33829961-33829974 chr11:33829958-33829977 chr11:33829963-33829975
38	FOXP2	chr11:33829787-33830116	SK-N-MC	brain:	n/a	n/a
39	CTCF	chr11:33829756-33830167	GM12878	blood:	n/a	chr11:33829962-33829972 chr11:33829958-33829974 chr11:33829959-33829980 chr11:33829960-33829969 chr11:33829960-33829973 chr11:33829957-33829975
40	YY1	chr11:33829833-33830157	H1-hESC	embryonic stem cell:	n/a	n/a
41	CTCF	chr11:33829810-33830131	A549	lung:	n/a	chr11:33829962-33829972 chr11:33829958-33829974 chr11:33829959-33829980 chr11:33829960-33829969 chr11:33829960-33829973 chr11:33829957-33829975
42	CTCF	chr11:33829817-33830136	GM19240	blood:	n/a	chr11:33829962-33829972 chr11:33829958-33829974 chr11:33829959-33829980 chr11:33829960-33829969 chr11:33829960-33829973 chr11:33829957-33829975
43	JUND	chr11:33829831-33830109	K562	blood:	n/a	chr11:33829973-33829980
44	CTCF	chr11:33829766-33830098	A549	lung:	n/a	chr11:33829962-33829972 chr11:33829958-33829974 chr11:33829959-33829980 chr11:33829960-33829969 chr11:33829960-33829973 chr11:33829957-33829975
45	CTCF	chr11:33829711-33830213	A549	lung:	n/a	chr11:33829962-33829972 chr11:33829958-33829974 chr11:33829959-33829980 chr11:33829960-33829969 chr11:33829960-33829973 chr11:33829957-33829975
46	GTF2F1	chr11:33829818-33830161	H1-hESC	embryonic stem cell:	n/a	n/a
47	CTCF	chr11:33829841-33830087	HepG2	liver:	n/a	chr11:33829962-33829972 chr11:33829958-33829974 chr11:33829959-33829980 chr11:33829960-33829969 chr11:33829960-33829973 chr11:33829957-33829975
48	RAD21	chr11:33829689-33830317	MCF-7	breast:	n/a	chr11:33829963-33829973 chr11:33829961-33829974 chr11:33829958-33829977 chr11:33829963-33829975
49	CTCF	chr11:33829837-33830114	MCF-7	breast:	n/a	chr11:33829962-33829972 chr11:33829958-33829974 chr11:33829959-33829980 chr11:33829960-33829969 chr11:33829960-33829973 chr11:33829957-33829975
50	CTCF	chr11:33829780-33829930	HCM	heart:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:33828509..33830233-chr11:34379250..34381956,2	MCF-7	breast:
2	chr11:33829510..33830030-chr11:34195544..34196521,2	K562	blood:
3	chr11:33829510..33830420-chr11:33849451..33850247,2	K562	blood:
4	chr11:33829495..33830904-chr11:33850724..33851895,13	K562	blood:
5	chr11:33829494..33830013-chr11:34380233..34381003,2	K562	blood:
6	chr11:33824257..33826244-chr11:33828062..33830421,2	K562	blood:
7	chr11:33829491..33830362-chr11:33850833..33851690,3	MCF-7	breast:
8	chr11:33829487..33830424-chr11:33992296..33993010,3	K562	blood:
9	chr11:33829464..33830463-chr11:33850763..33851644,6	MCF-7	breast:
10	chr11:33827463..33830110-chr11:33848684..33852679,4	K562	blood:
11	chr11:33829424..33830030-chr11:34009603..34010204,2	K562	blood:

Variant related genes	Relation type
ENSG00000254619	TF binding region
ENSG00000166016	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1000677	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10836113	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11032376	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs11032379	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11032382	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11032396	1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12576094	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs1464485	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs1533800	0.91[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs1533801	0.90[CHB][hapmap];0.81[JPT][hapmap]
rs17038	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1879755	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1915891	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2140067	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2177121	1.00[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2177122	0.91[CHB][hapmap];0.82[JPT][hapmap];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2272067	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2421211	0.84[ASN][1000 genomes]
rs4366460	0.84[ASN][1000 genomes]
rs4447153	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.84[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs4451703	0.87[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs4451704	0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs4755341	0.93[ASN][1000 genomes]
rs57800019	0.87[EUR][1000 genomes]
rs6484672	0.90[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs72638193	0.97[EUR][1000 genomes]
rs7950864	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs869904	0.94[EUR][1000 genomes]

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33824600-33830000	Weak transcription	Fetal Brain Male	brain
2	chr11:33829000-33830200	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr11:33829800-33830000	Enhancers	Skeletal Muscle Male	skeletal muscle
4	chr11:33829800-33830200	Enhancers	Osteobl	bone

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