Variant report

Variant	rs11032379
Chromosome Location	chr11:33800238-33800239
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr11:33800140-33800844	SK-N-SH	brain:	n/a	chr11:33800543-33800554 chr11:33800403-33800416
2	PBX3	chr11:33800159-33800787	SK-N-SH	brain:	n/a	chr11:33800281-33800301
3	GATA2	chr11:33800037-33800809	SH-SY5Y	brain:	n/a	chr11:33800543-33800554 chr11:33800403-33800416
4	YY1	chr11:33800233-33800649	SK-N-SH_RA	brain:	n/a	n/a
5	PBX3	chr11:33800220-33800732	SK-N-SH	brain:	n/a	chr11:33800281-33800301
6	GATA3	chr11:33800120-33800919	SK-N-SH	brain:	n/a	chr11:33800543-33800554 chr11:33800903-33800910 chr11:33800903-33800910 chr11:33800903-33800910 chr11:33800902-33800912 chr11:33800403-33800416
7	TCF12	chr11:33800199-33800812	SK-N-SH	brain:	n/a	n/a
8	JUND	chr11:33800214-33800786	SK-N-SH	brain:	n/a	chr11:33800428-33800440 chr11:33800467-33800481
9	KAP1	chr11:33800040-33800793	HEK293	kidney:	n/a	n/a
10	SP1	chr11:33800228-33800601	H1-hESC	embryonic stem cell:	n/a	chr11:33800317-33800326
11	BACH1	chr11:33799980-33800465	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr11:33795039..33797877-chr11:33799009..33801476,4	K562	blood:
2	chr11:33800180..33801974-chr11:33802206..33805134,2	K562	blood:
3	chr11:33796653..33798601-chr11:33799418..33801172,2	MCF-7	breast:
4	chr11:33795039..33797911-chr11:33799630..33801680,2	K562	blood:
5	chr11:33765991..33768760-chr11:33799223..33801233,2	K562	blood:
6	chr11:33783005..33784901-chr11:33798617..33800423,2	K562	blood:

Variant related genes	Relation type
FBXO3	TF binding region
ENSG00000110429	Chromatin interaction
ENSG00000255272	Chromatin interaction
ENSG00000254508	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1000677	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10836113	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11032376	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11032382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032396	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12576094	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1464485	0.97[EUR][1000 genomes]
rs1533800	0.90[ASN][1000 genomes]
rs1533801	0.81[ASN][1000 genomes]
rs17038	0.85[ASN][1000 genomes]
rs1879755	0.81[ASN][1000 genomes]
rs1915891	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2140067	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2177121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2177122	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2272067	0.97[EUR][1000 genomes]
rs2421211	0.90[ASN][1000 genomes]
rs4366460	0.90[ASN][1000 genomes]
rs4447153	0.83[ASN][1000 genomes]
rs4451703	0.83[ASN][1000 genomes]
rs4451704	0.83[ASN][1000 genomes]
rs4755341	0.93[ASN][1000 genomes]
rs4756033	0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57800019	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6484672	0.92[ASN][1000 genomes]
rs72638193	0.95[EUR][1000 genomes]
rs7950864	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs869904	0.92[EUR][1000 genomes]

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33797200-33800800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:33797200-33801600	Weak transcription	Aorta	Aorta
3	chr11:33797200-33801600	Weak transcription	Ovary	ovary
4	chr11:33797600-33801400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr11:33797600-33801400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:33798000-33800600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
7	chr11:33798200-33800400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr11:33798400-33802000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:33798600-33800400	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr11:33799200-33800400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr11:33799200-33800800	Enhancers	H1 Cell Line	embryonic stem cell
12	chr11:33799400-33800400	Bivalent Enhancer	Fetal Thymus	thymus
13	chr11:33799400-33800600	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr11:33799400-33801800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr11:33799400-33802000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
16	chr11:33799600-33800400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr11:33799600-33800400	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:33799600-33800600	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr11:33799600-33800600	Bivalent Enhancer	Fetal Muscle Leg	muscle
20	chr11:33799600-33800800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:33799600-33801400	Enhancers	HSMMtube	muscle
22	chr11:33799600-33801400	Enhancers	Osteobl	bone
23	chr11:33799600-33801800	Enhancers	Fetal Heart	heart
24	chr11:33799600-33802000	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr11:33799600-33802200	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr11:33799600-33802200	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr11:33799600-33802200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr11:33799600-33802400	Enhancers	NHLF	lung
29	chr11:33799800-33800400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:33799800-33800400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
31	chr11:33799800-33800400	Bivalent Enhancer	Fetal Stomach	stomach
32	chr11:33799800-33800400	Enhancers	Right Atrium	heart
33	chr11:33799800-33800400	Enhancers	Right Ventricle	heart
34	chr11:33799800-33800600	Flanking Active TSS	Brain Germinal Matrix	brain
35	chr11:33799800-33800600	Bivalent Enhancer	Fetal Lung	lung
36	chr11:33799800-33800600	Bivalent Enhancer	Thymus	Thymus
37	chr11:33799800-33800800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr11:33799800-33801200	Enhancers	Cortex derived primary cultured neurospheres	brain
39	chr11:33799800-33801200	Enhancers	Fetal Brain Male	brain
40	chr11:33799800-33801400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr11:33799800-33801600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr11:33799800-33801800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr11:33799800-33802000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr11:33799800-33802000	Enhancers	NHDF-Ad	bronchial
45	chr11:33799800-33802200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr11:33799800-33802400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr11:33799800-33802400	Enhancers	HSMM	muscle
48	chr11:33799800-33802800	Enhancers	Left Ventricle	heart
49	chr11:33800000-33800400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
50	chr11:33800000-33800400	Flanking Active TSS	Fetal Brain Female	brain

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