Variant report

Variant	rs17038
Chromosome Location	chr11:33826317-33826318
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:33720036..33722677-chr11:33824670..33827365,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC132216.1-2	chr11:33826314-33826420	ENSG00000255169

Variant related genes	Relation type
ENSG00000205177	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1000677	0.95[CHB][hapmap];0.93[CHD][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs10836113	0.84[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11032376	0.80[JPT][hapmap]
rs11032379	0.85[ASN][1000 genomes]
rs11032382	0.85[ASN][1000 genomes]
rs11032396	0.90[ASN][1000 genomes]
rs12576094	0.80[JPT][hapmap]
rs1464485	0.80[JPT][hapmap]
rs1533800	0.84[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1533801	0.84[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.85[JPT][hapmap];0.85[MEX][hapmap];0.83[TSI][hapmap];0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1879755	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1915891	0.88[ASN][1000 genomes]
rs1915894	0.87[CEU][hapmap]
rs2140067	0.85[ASN][1000 genomes]
rs2177121	0.95[CHB][hapmap];0.93[CHD][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs2177122	0.95[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs2272067	0.80[JPT][hapmap]
rs2421211	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3794200	0.83[CEU][hapmap]
rs4366460	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4447153	0.91[ASW][hapmap];0.84[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.98[LWK][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4451703	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4451704	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4755341	0.92[ASN][1000 genomes]
rs4756033	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs6484672	0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs7103573	0.83[CEU][hapmap]
rs7117326	0.80[EUR][1000 genomes]
rs7119840	0.83[CEU][hapmap]
rs7126723	0.87[CEU][hapmap]
rs7946109	0.84[EUR][1000 genomes]
rs7950864	0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs869904	0.80[JPT][hapmap]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs17038	CD59	Cis_1M	lymphoblastoid	RTeQTL
rs17038	CD59	cis	Esophagus Muscularis	GTEx
rs17038	CD59	cis	cerebellum	SCAN
rs17038	CD59	cis	Artery Tibial	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33824600-33830000	Weak transcription	Fetal Brain Male	brain
2	chr11:33825200-33827000	Bivalent Enhancer	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links