Variant report

Variant	rs2901376
Chromosome Location	chr11:33780819-33780820
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:33777788..33782173-chr11:33783108..33786558,6	K562	blood:
2	chr11:33780255..33782060-chr11:33788387..33790193,2	K562	blood:
3	chr11:33770157..33771745-chr11:33780759..33782708,2	K562	blood:

Variant related genes	Relation type
ENSG00000110429	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10836108	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1096558	0.87[ASN][1000 genomes]
rs1096559	0.87[ASN][1000 genomes]
rs1096563	0.87[ASN][1000 genomes]
rs11032363	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs11032366	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11032374	0.89[EUR][1000 genomes]
rs11032380	0.86[CEU][hapmap]
rs1112840	0.89[EUR][1000 genomes]
rs12146621	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12282096	0.86[CEU][hapmap];0.84[AMR][1000 genomes]
rs12361553	0.86[CEU][hapmap]
rs1402953	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs1402957	0.83[EUR][1000 genomes]
rs1464484	0.85[AMR][1000 genomes]
rs1464486	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1464487	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1522087	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1578986	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1738547	0.87[ASN][1000 genomes]
rs1738548	0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2056396	0.87[CEU][hapmap];0.82[AMR][1000 genomes]
rs2140066	0.84[AMR][1000 genomes]
rs2272065	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3181274	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs34944910	0.89[EUR][1000 genomes]
rs35162575	0.89[EUR][1000 genomes]
rs4755340	0.82[CEU][hapmap]
rs704702	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs704703	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7125621	0.86[CEU][hapmap];0.82[AMR][1000 genomes]
rs7927218	0.87[CEU][hapmap];0.84[AMR][1000 genomes]
rs831594	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs831596	0.83[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs831603	0.94[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs939804	0.81[CEU][hapmap]
rs953871	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523356	chr11:33777334-33797408	Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33758800-33795000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:33759000-33781000	Weak transcription	Fetal Brain Male	brain
3	chr11:33759000-33795200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr11:33760400-33785200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:33763200-33792200	Strong transcription	Fetal Thymus	thymus
6	chr11:33763200-33792400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr11:33764000-33781600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:33764200-33792000	Strong transcription	Primary T helper cells fromperipheralblood	blood
9	chr11:33764400-33791200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr11:33764400-33792200	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr11:33764400-33792400	Strong transcription	Primary T cells fromperipheralblood	blood
12	chr11:33764400-33792400	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr11:33764600-33785200	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr11:33765200-33785800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:33765400-33793800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr11:33766600-33787600	Weak transcription	Stomach Mucosa	stomach
17	chr11:33767400-33791400	Strong transcription	Placenta	Placenta
18	chr11:33767600-33785800	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr11:33767600-33792400	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr11:33767800-33781000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr11:33767800-33784000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr11:33767800-33784600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr11:33767800-33785800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr11:33767800-33792200	Strong transcription	Adipose Nuclei	Adipose
25	chr11:33767800-33792400	Strong transcription	Primary B cells from peripheral blood	blood
26	chr11:33768000-33785800	Weak transcription	Small Intestine	intestine
27	chr11:33769000-33782200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr11:33769600-33783800	Strong transcription	Rectal Mucosa Donor 29	rectum
29	chr11:33769600-33795000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr11:33770200-33791200	Strong transcription	Liver	Liver
31	chr11:33770400-33789200	Weak transcription	NHLF	lung
32	chr11:33770800-33791600	Strong transcription	Duodenum Mucosa	Duodenum
33	chr11:33772200-33785800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
34	chr11:33772600-33785400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr11:33774400-33782400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr11:33774400-33782600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr11:33774600-33782600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
38	chr11:33774800-33781800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
39	chr11:33775000-33782200	Strong transcription	Dnd41	blood
40	chr11:33775200-33786200	Weak transcription	Esophagus	oesophagus
41	chr11:33775400-33785200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr11:33775400-33785800	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr11:33775800-33785800	Weak transcription	Fetal Heart	heart
44	chr11:33776200-33781800	Strong transcription	Primary hematopoietic stem cells	blood
45	chr11:33776400-33781400	Strong transcription	Ovary	ovary
46	chr11:33776400-33782000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr11:33776400-33782200	Strong transcription	Fetal Intestine Large	intestine
48	chr11:33776400-33782200	Strong transcription	Thymus	Thymus
49	chr11:33776400-33782400	Strong transcription	Fetal Stomach	stomach
50	chr11:33776600-33781200	Strong transcription	Brain Inferior Temporal Lobe	brain

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