Variant report

Variant	rs2272065
Chromosome Location	chr11:33775982-33775983
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:33772540..33774284-chr11:33775913..33777575,2	K562	blood:
2	chr11:33775083..33776603-chr13:22049742..22051601,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10836108	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1096558	0.84[ASN][1000 genomes]
rs1096559	0.84[ASN][1000 genomes]
rs1096563	0.84[ASN][1000 genomes]
rs11032366	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12146621	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1464486	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1464487	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1522087	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1578986	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1738547	0.84[ASN][1000 genomes]
rs1738548	0.92[ASN][1000 genomes]
rs2901376	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs704702	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs704703	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs831594	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs831596	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs831603	0.81[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs953871	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33758800-33795000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:33759000-33778400	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr11:33759000-33780800	Weak transcription	Psoas Muscle	Psoas
4	chr11:33759000-33781000	Weak transcription	Fetal Brain Male	brain
5	chr11:33759000-33795200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr11:33759400-33778200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr11:33760400-33785200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr11:33763200-33792200	Strong transcription	Fetal Thymus	thymus
9	chr11:33763200-33792400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr11:33764000-33781600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:33764200-33792000	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr11:33764400-33791200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr11:33764400-33792200	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr11:33764400-33792400	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr11:33764400-33792400	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr11:33764600-33785200	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr11:33764800-33777000	Weak transcription	Gastric	stomach
18	chr11:33765200-33778400	Weak transcription	Pancreas	Pancrea
19	chr11:33765200-33780000	Weak transcription	Right Ventricle	heart
20	chr11:33765200-33785800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr11:33765400-33780000	Weak transcription	Aorta	Aorta
22	chr11:33765400-33793800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr11:33766600-33787600	Weak transcription	Stomach Mucosa	stomach
24	chr11:33766800-33776000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr11:33767000-33779000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:33767200-33780800	Weak transcription	HepG2	liver
27	chr11:33767400-33791400	Strong transcription	Placenta	Placenta
28	chr11:33767600-33776800	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr11:33767600-33785800	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr11:33767600-33792400	Strong transcription	Primary neutrophils fromperipheralblood	blood
31	chr11:33767800-33781000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr11:33767800-33784000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr11:33767800-33784600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr11:33767800-33785800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr11:33767800-33792200	Strong transcription	Adipose Nuclei	Adipose
36	chr11:33767800-33792400	Strong transcription	Primary B cells from peripheral blood	blood
37	chr11:33768000-33785800	Weak transcription	Small Intestine	intestine
38	chr11:33768200-33780000	Weak transcription	K562	blood
39	chr11:33769000-33782200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr11:33769600-33783800	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr11:33769600-33795000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr11:33769800-33780800	Weak transcription	Pancreatic Islets	Pancreatic Islet
43	chr11:33770000-33780000	Weak transcription	A549	lung
44	chr11:33770200-33791200	Strong transcription	Liver	Liver
45	chr11:33770400-33789200	Weak transcription	NHLF	lung
46	chr11:33770800-33791600	Strong transcription	Duodenum Mucosa	Duodenum
47	chr11:33771000-33779000	Strong transcription	Brain Hippocampus Middle	brain
48	chr11:33771200-33778000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr11:33771400-33776400	Weak transcription	Fetal Intestine Small	intestine
50	chr11:33771400-33776400	Weak transcription	Fetal Stomach	stomach

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