Variant report

Variant	rs17761158
Chromosome Location	chr11:33771816-33771817
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:33757699..33759808-chr11:33770937..33773634,2	K562	blood:
2	chr11:33770627..33772956-chr11:33794508..33796615,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110429	Chromatin interaction
ENSG00000254508	Chromatin interaction
ENSG00000085063	Chromatin interaction

rs_ID	r²[population]
rs11032363	1.00[LWK][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs11032380	0.93[MKK][hapmap];1.00[YRI][hapmap]
rs11032438	1.00[ASN][1000 genomes]
rs11032453	1.00[ASN][1000 genomes]
rs11032454	1.00[ASN][1000 genomes]
rs12420267	1.00[YRI][hapmap]
rs1402953	0.89[MKK][hapmap];1.00[YRI][hapmap]
rs3181274	1.00[YRI][hapmap]
rs4755340	1.00[YRI][hapmap]
rs7945864	1.00[ASN][1000 genomes]
rs831611	1.00[YRI][hapmap]
rs831625	1.00[YRI][hapmap]
rs831635	1.00[YRI][hapmap]
rs9282776	1.00[ASN][1000 genomes]
rs939804	0.81[MKK][hapmap]

SNP	Gene	Cis/trans	Tissue	Source
rs17761158	PDHX	cis	cerebellum	SCAN

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33758800-33774600	Weak transcription	Esophagus	oesophagus
2	chr11:33758800-33795000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:33759000-33773400	Weak transcription	Lung	lung
4	chr11:33759000-33774600	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:33759000-33778400	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr11:33759000-33780800	Weak transcription	Psoas Muscle	Psoas
7	chr11:33759000-33781000	Weak transcription	Fetal Brain Male	brain
8	chr11:33759000-33795200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:33759200-33774600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr11:33759400-33773400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr11:33759400-33778200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr11:33759600-33774600	Weak transcription	HSMMtube	muscle
13	chr11:33760000-33774400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr11:33760200-33774600	Weak transcription	Hela-S3	cervix
15	chr11:33760400-33774600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr11:33760400-33785200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr11:33763200-33792200	Strong transcription	Fetal Thymus	thymus
18	chr11:33763200-33792400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr11:33764000-33781600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr11:33764200-33773400	Strong transcription	Primary B cells from cord blood	blood
21	chr11:33764200-33792000	Strong transcription	Primary T helper cells fromperipheralblood	blood
22	chr11:33764400-33791200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr11:33764400-33792200	Strong transcription	Primary monocytes fromperipheralblood	blood
24	chr11:33764400-33792400	Strong transcription	Primary T cells fromperipheralblood	blood
25	chr11:33764400-33792400	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr11:33764600-33785200	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr11:33764800-33777000	Weak transcription	Gastric	stomach
28	chr11:33765200-33773400	Weak transcription	Colonic Mucosa	Colon
29	chr11:33765200-33774600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr11:33765200-33778400	Weak transcription	Pancreas	Pancrea
31	chr11:33765200-33780000	Weak transcription	Right Ventricle	heart
32	chr11:33765200-33785800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr11:33765400-33774600	Weak transcription	Ovary	ovary
34	chr11:33765400-33774600	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr11:33765400-33774600	Weak transcription	Spleen	Spleen
36	chr11:33765400-33780000	Weak transcription	Aorta	Aorta
37	chr11:33765400-33793800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr11:33765600-33773600	Weak transcription	Fetal Brain Female	brain
39	chr11:33766600-33787600	Weak transcription	Stomach Mucosa	stomach
40	chr11:33766800-33776000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr11:33767000-33779000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr11:33767200-33780800	Weak transcription	HepG2	liver
43	chr11:33767400-33791400	Strong transcription	Placenta	Placenta
44	chr11:33767600-33776800	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr11:33767600-33785800	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr11:33767600-33792400	Strong transcription	Primary neutrophils fromperipheralblood	blood
47	chr11:33767800-33772200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr11:33767800-33772200	Strong transcription	Thymus	Thymus
49	chr11:33767800-33773000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr11:33767800-33781000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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