Variant report

Variant	rs7948037
Chromosome Location	chr11:33854029-33854030
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10836118	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11032400	0.92[EUR][1000 genomes]
rs11032403	0.81[EUR][1000 genomes]
rs11032410	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032411	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032412	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11032413	0.84[EUR][1000 genomes]
rs12420267	0.91[CEU][hapmap];0.81[EUR][1000 genomes]
rs12797549	0.84[EUR][1000 genomes]
rs12797630	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12805407	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4755340	0.83[CEU][hapmap]
rs4756052	0.84[EUR][1000 genomes]
rs4756053	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6416077	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6484676	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6484677	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6484678	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7131427	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73496328	0.96[ASN][1000 genomes]
rs7928022	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7935418	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7944285	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944476	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7944954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs939804	0.82[CEU][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7948037	CD59	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33853200-33856600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr11:33853200-33857000	Weak transcription	NHEK	skin
3	chr11:33853400-33856600	Weak transcription	HMEC	breast
4	chr11:33853400-33857000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:33854000-33854200	Bivalent/Poised TSS	K562	blood

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