Variant report

Variant	rs16924726
Chromosome Location	chr11:33768481-33768482
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:33757828..33761273-chr11:33765808..33770040,4	K562	blood:
2	chr11:33767188..33769645-chr11:33773355..33776334,2	MCF-7	breast:
3	chr11:33765991..33768760-chr11:33799223..33801233,2	K562	blood:
4	chr11:33763274..33765772-chr11:33766877..33769018,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000085063	Chromatin interaction
ENSG00000110429	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1402956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1522088	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1632527	1.00[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2177123	0.82[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes]
rs2231453	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2421209	0.85[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes]
rs2686246	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs704700	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs831593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs831597	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs831598	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs831601	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs831602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs831619	0.90[JPT][hapmap]
rs831623	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs831626	0.94[CHB][hapmap];0.82[CHD][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[ASN][1000 genomes]
rs831628	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs831637	0.90[JPT][hapmap]

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:33758000-33770200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr11:33758600-33770200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr11:33758800-33770000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr11:33758800-33770800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr11:33758800-33771800	Weak transcription	Brain Angular Gyrus	brain
6	chr11:33758800-33774600	Weak transcription	Esophagus	oesophagus
7	chr11:33758800-33795000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:33759000-33769200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr11:33759000-33770200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr11:33759000-33771800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:33759000-33773400	Weak transcription	Lung	lung
12	chr11:33759000-33774600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr11:33759000-33778400	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr11:33759000-33780800	Weak transcription	Psoas Muscle	Psoas
15	chr11:33759000-33781000	Weak transcription	Fetal Brain Male	brain
16	chr11:33759000-33795200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr11:33759200-33770200	Weak transcription	GM12878-XiMat	blood
18	chr11:33759200-33771000	Weak transcription	Brain Anterior Caudate	brain
19	chr11:33759200-33771200	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr11:33759200-33774600	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr11:33759400-33770600	Weak transcription	NH-A	brain
22	chr11:33759400-33773400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr11:33759400-33778200	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr11:33759600-33774600	Weak transcription	HSMMtube	muscle
25	chr11:33759800-33769400	Weak transcription	Osteobl	bone
26	chr11:33760000-33774400	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr11:33760200-33774600	Weak transcription	Hela-S3	cervix
28	chr11:33760400-33769200	Weak transcription	NHLF	lung
29	chr11:33760400-33770600	Weak transcription	NHDF-Ad	bronchial
30	chr11:33760400-33774600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr11:33760400-33785200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr11:33763200-33792200	Strong transcription	Fetal Thymus	thymus
33	chr11:33763200-33792400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr11:33764000-33781600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr11:33764200-33769600	Weak transcription	HUVEC	blood vessel
36	chr11:33764200-33773400	Strong transcription	Primary B cells from cord blood	blood
37	chr11:33764200-33792000	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr11:33764400-33791200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr11:33764400-33792200	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr11:33764400-33792400	Strong transcription	Primary T cells fromperipheralblood	blood
41	chr11:33764400-33792400	Strong transcription	Monocytes-CD14+_RO01746	blood
42	chr11:33764600-33785200	Strong transcription	Primary T helper cells PMA-I stimulated	--
43	chr11:33764800-33777000	Weak transcription	Gastric	stomach
44	chr11:33765200-33768600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr11:33765200-33768600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr11:33765200-33769600	Weak transcription	Fetal Stomach	stomach
47	chr11:33765200-33770600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr11:33765200-33771000	Weak transcription	Fetal Muscle Leg	muscle
49	chr11:33765200-33773400	Weak transcription	Colonic Mucosa	Colon
50	chr11:33765200-33774600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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