Variant report

Variant	rs1533585
Chromosome Location	chr18:14933605-14933606
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:14921268..14923858-chr18:14933447..14934992,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1518582	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1713900	1.00[EUR][1000 genomes]
rs1770761	1.00[EUR][1000 genomes]
rs28706026	1.00[EUR][1000 genomes]
rs56124141	1.00[EUR][1000 genomes]
rs57143224	1.00[EUR][1000 genomes]
rs58271532	1.00[EUR][1000 genomes]
rs58504105	1.00[EUR][1000 genomes]
rs59492338	1.00[EUR][1000 genomes]
rs7239598	1.00[EUR][1000 genomes]
rs73427558	1.00[EUR][1000 genomes]
rs73427575	1.00[EUR][1000 genomes]
rs73961128	1.00[EUR][1000 genomes]
rs73961135	1.00[EUR][1000 genomes]
rs73961136	1.00[EUR][1000 genomes]
rs785980	1.00[EUR][1000 genomes]
rs785983	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs785987	1.00[EUR][1000 genomes]
rs785998	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs785999	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs786005	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs786014	1.00[EUR][1000 genomes]
rs786015	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs786054	1.00[EUR][1000 genomes]
rs9748611	1.00[EUR][1000 genomes]
rs9748869	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916419	chr18:14418522-15165372	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	esv2751771	chr18:14704694-15106727	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv909434	chr18:14841828-15149366	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv576542	chr18:14913292-14978677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv33381	chr18:14929347-15052868	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv960220	chr18:14931771-14935356	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:14933000-14935600	Enhancers	Rectal Mucosa Donor 29	rectum
2	chr18:14933200-14934800	Enhancers	Sigmoid Colon	Sigmoid Colon
3	chr18:14933200-14937200	Enhancers	Duodenum Mucosa	Duodenum
4	chr18:14933200-14937200	ZNF genes & repeats	Fetal Intestine Small	intestine
5	chr18:14933200-14937800	Enhancers	Rectal Mucosa Donor 31	rectum
6	chr18:14933400-14934000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr18:14933600-14936200	Enhancers	Colonic Mucosa	Colon

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