Variant report

Variant	rs56124141
Chromosome Location	chr18:14844549-14844550
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1518582	1.00[EUR][1000 genomes]
rs1533585	1.00[EUR][1000 genomes]
rs1713900	1.00[EUR][1000 genomes]
rs1770761	1.00[EUR][1000 genomes]
rs28706026	1.00[EUR][1000 genomes]
rs57143224	1.00[EUR][1000 genomes]
rs58271532	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58504105	1.00[EUR][1000 genomes]
rs59492338	1.00[EUR][1000 genomes]
rs7239598	1.00[EUR][1000 genomes]
rs73427558	1.00[EUR][1000 genomes]
rs73427575	1.00[EUR][1000 genomes]
rs73961128	1.00[EUR][1000 genomes]
rs73961135	1.00[EUR][1000 genomes]
rs73961136	1.00[EUR][1000 genomes]
rs785980	1.00[EUR][1000 genomes]
rs785983	1.00[EUR][1000 genomes]
rs785987	1.00[EUR][1000 genomes]
rs785998	1.00[EUR][1000 genomes]
rs785999	1.00[EUR][1000 genomes]
rs786005	1.00[EUR][1000 genomes]
rs786014	1.00[EUR][1000 genomes]
rs786015	1.00[EUR][1000 genomes]
rs786054	1.00[EUR][1000 genomes]
rs9748611	1.00[EUR][1000 genomes]
rs9748869	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428006	chr18:14087067-14874733	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
2	nsv916419	chr18:14418522-15165372	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	esv2751771	chr18:14704694-15106727	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
4	esv2756821	chr18:14741611-14865985	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
5	nsv961033	chr18:14838212-14874870	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases
6	nsv909434	chr18:14841828-15149366	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv9619	chr18:14842691-14851922	Active TSS Weak transcription Flanking Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:14841800-14852000	Weak transcription	Osteobl	bone

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