Variant report

Variant	rs786014
Chromosome Location	chr18:14931710-14931711
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ANKRD30B-3	chr18:14930444-14931880	XLOC_012636

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1518582	1.00[EUR][1000 genomes]
rs1533585	1.00[EUR][1000 genomes]
rs1713900	1.00[EUR][1000 genomes]
rs1770761	1.00[EUR][1000 genomes]
rs28706026	1.00[EUR][1000 genomes]
rs56124141	1.00[EUR][1000 genomes]
rs57143224	1.00[EUR][1000 genomes]
rs58271532	1.00[EUR][1000 genomes]
rs58504105	1.00[EUR][1000 genomes]
rs59492338	1.00[EUR][1000 genomes]
rs7239598	1.00[EUR][1000 genomes]
rs73427558	1.00[EUR][1000 genomes]
rs73427575	1.00[EUR][1000 genomes]
rs73961128	1.00[EUR][1000 genomes]
rs73961135	1.00[EUR][1000 genomes]
rs73961136	1.00[EUR][1000 genomes]
rs785980	1.00[EUR][1000 genomes]
rs785983	1.00[EUR][1000 genomes]
rs785987	1.00[EUR][1000 genomes]
rs785998	1.00[EUR][1000 genomes]
rs785999	1.00[EUR][1000 genomes]
rs786005	1.00[EUR][1000 genomes]
rs786015	1.00[EUR][1000 genomes]
rs786054	1.00[EUR][1000 genomes]
rs9748611	1.00[EUR][1000 genomes]
rs9748869	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916419	chr18:14418522-15165372	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	esv2751771	chr18:14704694-15106727	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
3	nsv909434	chr18:14841828-15149366	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv576542	chr18:14913292-14978677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv960219	chr18:14928912-14931771	Weak transcription Enhancers	lncRNA	n/a	inside rSNPs	diseases
6	esv33381	chr18:14929347-15052868	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:14920200-14933200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr18:14922200-14933000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr18:14931200-14932000	Enhancers	Fetal Intestine Large	intestine
4	chr18:14931600-14933200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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