Variant report
| Variant | rs785998 |
|---|---|
| Chromosome Location | chr18:14916717-14916718 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:26)
| rs_ID | r2[population] |
|---|---|
| rs1518582 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1533585 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1713900 | 1.00[EUR][1000 genomes] |
| rs1770761 | 1.00[EUR][1000 genomes] |
| rs28706026 | 1.00[EUR][1000 genomes] |
| rs56124141 | 1.00[EUR][1000 genomes] |
| rs57143224 | 1.00[EUR][1000 genomes] |
| rs58271532 | 1.00[EUR][1000 genomes] |
| rs58504105 | 1.00[EUR][1000 genomes] |
| rs59492338 | 1.00[EUR][1000 genomes] |
| rs7239598 | 1.00[EUR][1000 genomes] |
| rs73427558 | 1.00[EUR][1000 genomes] |
| rs73427575 | 1.00[EUR][1000 genomes] |
| rs73961128 | 1.00[EUR][1000 genomes] |
| rs73961135 | 1.00[EUR][1000 genomes] |
| rs73961136 | 1.00[EUR][1000 genomes] |
| rs785980 | 0.83[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs785983 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs785987 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs785999 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs786005 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs786014 | 1.00[EUR][1000 genomes] |
| rs786015 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs786054 | 1.00[EUR][1000 genomes] |
| rs9748611 | 1.00[EUR][1000 genomes] |
| rs9748869 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916419 | chr18:14418522-15165372 | Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 27 gene(s) | inside rSNPs | diseases |
| 2 | esv2751771 | chr18:14704694-15106727 | Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 18 gene(s) | inside rSNPs | diseases |
| 3 | nsv909434 | chr18:14841828-15149366 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 4 | nsv960218 | chr18:14897850-14928912 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv576542 | chr18:14913292-14978677 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:14916400-14925200 | Weak transcription | Spleen | Spleen |
