Variant report

Variant	rs1536252
Chromosome Location	chr10:90255471-90255472
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10509551	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10887822	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10887831	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11202746	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11202748	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11202752	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11202754	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11202757	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11202761	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11202766	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12357364	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12357948	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12359950	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12360281	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12413139	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12413825	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12572235	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1325906	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1342455	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1342458	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17112571	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17112575	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1891431	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2153855	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2185785	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28794023	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4145084	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4520503	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4933482	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4933483	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4934406	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4934410	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61640455	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7076491	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73355485	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73355487	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9664569	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482385	chr10:90066140-90259751	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv948664	chr10:90076715-90517150	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1054984	chr10:90122512-90278038	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv1050587	chr10:90146582-90272627	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv540739	chr10:90146582-90272627	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv529324	chr10:90198865-90738588	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
7	nsv825500	chr10:90221443-90302503	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv533167	chr10:90236197-90341481	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90251200-90258800	Weak transcription	Fetal Thymus	thymus
2	chr10:90253400-90256200	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr10:90253400-90256400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr10:90253400-90258000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr10:90254000-90256400	Weak transcription	Fetal Lung	lung
6	chr10:90254000-90256600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:90254000-90259400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr10:90254000-90259600	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr10:90254200-90257400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr10:90254200-90259200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr10:90254200-90259400	Weak transcription	Osteobl	bone
12	chr10:90254200-90259600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr10:90254200-90259600	Weak transcription	NHDF-Ad	bronchial
14	chr10:90254600-90259000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr10:90254800-90255600	Weak transcription	Primary hematopoietic stem cells	blood
16	chr10:90255000-90256200	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr10:90255000-90256200	Weak transcription	Liver	Liver
18	chr10:90255000-90256400	Enhancers	HUES48 Cell Line	embryonic stem cell
19	chr10:90255200-90256000	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr10:90255400-90255800	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr10:90255400-90256000	Enhancers	Fetal Kidney	kidney
22	chr10:90255400-90256400	Enhancers	Primary B cells from cord blood	blood

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